Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 183 9e-41 seq8 125 2e-23 seq2 95.1 4e-14 seq10 93.3 1e-13 seq3 93.3 1e-13 seq17 91.5 4e-13 seq14 91.5 4e-13 seq4 87.8 5e-12 >seq5 Length=8147712 Score = 183 bits (202), Expect = 9e-41 Identities = 555/849 (65%), Gaps = 12/849 (1%) Strand=Plus/Plus Query 349477 CGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGA 349536 ||| || || || || |||| ||| | || || ||||| | || |||||| | || Sbjct 7787366 CGGAGAAAAGCCTATGATTGCTGTTCAGTACAAGGGTGAGGAGAAGCAATTTGCCGCTGA 7787425 Query 349537 AGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGA 349596 || || || ||||||||| | || || ||| || || || || || || | || Sbjct 7787426 GGAGATATCCTCAATGGTTCTCGTAAAGATGCGCGAGATCGCCGAGGCGTACCTGGGATC 7787485 Query 349597 AACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGC 349656 ||||| | | || || | || || || || || || || || | |||||| || Sbjct 7787486 CACAGTTAAGAACGCCGTGGTCACGGTGCCTGCATACTTCAACGACTCTCAGCGTCAAGC 7787545 Query 349657 AACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCAC 349716 || || || || ||| ||| || || | ||||| | ||||| ||||| || ||||| Sbjct 7787546 GACGAAGGACGCCGGCGTCATCGCCGGCCTCAATGTCTTGAGAATTATTAACGAGCCCAC 7787605 Query 349717 TGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGAC----CAAG--aaaaaaaTAT 349770 || || || ||||| || || ||||| || | | | | || | | || ||| | Sbjct 7787606 GGCCGCCGCCATTGCTTACGGCCTTGACAAGAAGGGCGGGGGTGCAGGCGAGAAGAATGT 7787665 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 || || || || | ||||| || || |||||||| || || || || | |||||||| Sbjct 7787666 GCTGATCTTCGAYCTTGGTGGCGGCACATTTGATGTGTCTCTTCTCACCATAGAAGAGGG 7787725 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || |||||| | || ||||| || || |||||||| || ||||| || || || Sbjct 7787726 TATCTTCGAGGTTAAATCCACCGCTGGGGACACCCATCTTGGAGGGGAAGACTTCGACAA 7787785 Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAG 349949 | || || || || ||| | || || ||||| |||| | | ||||| | | Sbjct 7787786 CAGGCTGGTGAGCCACTTCGTTCAGGAGTTCAAGCGG-AAGCACAGGAAGGATATCAGCG 7787844 Query 349950 ATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTAT 350009 ||||| || || | | | | || || || |||||||| || ||| | | | | Sbjct 7787845 GGAATCCAAGGGCTCTCAGGAGATTGAGGACAGCATGTGAACGGGCGAAGAGGACGCTGT 7787904 Query 350010 CATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTT 350069 | || || |||| || |||| || || || || || || || | |||||||| | Sbjct 7787905 CCTCCACAGCCCAGACAACTATAGAGATCGACTCGCTGTACGAGGGGATTGATTTCTTCT 7787964 Query 350070 CATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTA-GAGCAACAATG 350128 | | || || || || |||| || ||| | |||||||| || | ||| || || Sbjct 7787965 CTACCATCACCCGCGCCAGGTTCGAGGAACTGAACATGGATCTCTTCAAGAGGTGCA-TG 7788023 Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188 || || ||||| ||| | | ||||| || ||| ||| | ||| | || || Sbjct 7788024 GAGCCGGTGGAGAAATGTCTGAGGGATGCTAAGATGGACAAGAGCAGGATCCACGATGTC 7788083 Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248 || | || || || || || | || || || || || ||| | ||| || ||||| Sbjct 7788084 GTCCTGGTCGGAGGCTCCACGAGGATCCCCAAGGTGCAGCAGCTGCTACAAGAATTTTTC 7788143 Query 350249 AATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGC 350307 ||||| ||||| | || | ||| || | || ||||| || || || || || || || || Sbjct 7788144 AATGGGAAAGAGCTCTGCAAGAGCA-TCAACCCAGACGAGGCGGTGGCGTACGGGGCGGC 7788202 Query 350308 TGTTCAGGC 350316 ||||||||| Sbjct 7788203 TGTTCAGGC 7788211 Score = 111 bits (122), Expect = 5e-19 Identities = 278/423 (66%), Gaps = 6/423 (1%) Strand=Plus/Plus Query 349478 GGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAA 349537 ||||| || || || |||| || | || || ||||| | || || || | ||| Sbjct 440089 GGTGACAAGCCTATGATTGTCGTCCAGTACAAGGGTGAGGAGAAGCAGTTCGCTGCGGAA 440148 Query 349538 GAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAA 349597 || || || || ||||| | ||||||||||||| || || || || ||||| || Sbjct 440149 GAGATCTCCTCTATGGTCCTGATTAAAATGAAGGAGATCGCCGACGCCTATTTGGGCTCT 440208 Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 | || | ||||||| | ||||| || || ||||| || ||| ||||||| ||| Sbjct 440209 AGTGTGAAGAATGCTGTGGTCACTGTCCCGGCGTATTTCAACGATTCCCAGCGGCAGGCA 440268 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 || || || ||||| ||||| || | || ||| | | || || || || || || Sbjct 440269 ACTAAGGACGCTGGGGTGATTGCCGGTCTGAACGTTATGCGCATCATCAACGAGCCTACC 440328 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAA------ATGAGTGACCAAGaaaaaaaTATT 349771 || || || ||||| || || || || ||| | ||||| || || || | Sbjct 440329 GCGGCGGCCATTGCGTACGGCCTGGACAAAAAGGCGACGAGTGTGGGCGAGAAGAACGTC 440388 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || ||||| | || || || || || || || || || || || | || ||||| Sbjct 440389 CTGATCTTTGACCTCGGCGGCGGCACCTTCGACGTCTCCCTCCTGACCATCGAGGAGGGT 440448 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || || || || || ||||| || || || || || || || Sbjct 440449 ATCTTCGAGGTGAAGGCCACGGCCGGCGACACCCATCTGGGAGGGGAGGACTTCGACAAC 440508 Query 349892 CGT 349894 ||| Sbjct 440509 CGT 440511 >seq8 Length=7641483 Score = 125 bits (138), Expect = 2e-23 Identities = 149/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 |||||| |||||||||| || || ||||||||| |||| | |||||||||||||||| Sbjct 3875894 GCTGTTGTTACTGTACCTGCATACTTTAATGATTCCCAAAGGACTGCAACAAAAGATGCC 3875953 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | ||||| || ||| ||||| | | || || |||||||||||||| || | | Sbjct 3875954 GGACGGATTGCTGGCTTAGATGTTTTGCGCATCATCAATGAACCCACTGCAGCTTCGTTG 3876013 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || ||||| |||| || | || || | | ||| ||||| | ||||| | || Sbjct 3876014 GCTTATGGATTTGAAAAGAAGA---ACAATG---AAACCATTCTCGTATTTGACCTTGGG 3876067 Query 349790 GGTGGTACTTTTGATGTATCA 349810 |||||||| |||||||||||| Sbjct 3876068 GGTGGTACGTTTGATGTATCA 3876088 Score = 91.5 bits (100), Expect = 4e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 |||||||| |||| ||| || || ||| | ||| | | || | | || || | || Sbjct 7582031 AAAATGAAAGAAACTGCCGAGGCTTATCTTGGTAAGAGTGTTTCGAAAGCAGTGGTCACA 7582090 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || ||||| ||||| ||||| || || | || ||||||||||| || || ||| || Sbjct 7582091 GTTCCAGCTTATTTCAATGACGCGCAAAGACAGGCTACAAAAGATGCGGGGAGAATTTCG 7582150 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 ||| | |||| | | || |||||||||||||||||||| || | | ||||||||| Sbjct 7582151 GGGCTTGATGTGCAGCGTATCATTAATGAACCCACTGCTGCTGCTCTCTCTTATGGGCTT 7582210 >seq2 Length=11374105 Score = 95.1 bits (104), Expect = 4e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 606312 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 606371 Query 235950 CCCAGCATCTCCATACA 235966 ||| |||||||||| || Sbjct 606372 CCCCGCATCTCCATTCA 606388 Score = 84.2 bits (92), Expect = 7e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| |||| ||||||||||||||||| || ||| || | Sbjct 10247100 GGGGATGTAGCTCAAATGGTAGAGCGCTYGCTTTGCATGCGAGAGGCACGGGGTTCGATC 10247159 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 10247160 CCCCGCATCTCCA 10247172 >seq10 Length=6603776 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 5966818 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 5966759 Query 235950 CCCAGCATCTCCAT 235963 ||| |||||||||| Sbjct 5966758 CCCCGCATCTCCAT 5966745 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 433088 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 433029 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 433028 CCCCGCATCTCCA 433016 Score = 86.0 bits (94), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 |||| || || || || || ||||| |||| | |||||||||||||||||||| | | Sbjct 503547 TTACCGTGCCTGCATACTTCAATGACTCCCAAAGAACTGCAACAAAAGATGCTGGCCGTA 503488 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 | || || || ||||||| | || ||||| ||||| |||||||| | | || |||| Sbjct 503487 TCGCTGGTTTGGATGTTCTCCGCATAATTAACGAACCAACTGCTGCTTCGCTGGCTTATG 503428 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | | || || | || || | | ||| ||||| | ||||| | || || || | Sbjct 503427 GATTCGAAAAGAAGA---ACAACG---AAACCATTCTCGTGTTTGACCTTGGAGGAGGCA 503374 Query 349797 CTTTTGATGTATCA 349810 | |||||||| ||| Sbjct 503373 CATTTGATGTTTCA 503360 >seq3 Length=8976907 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 3194456 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 3194397 Query 235950 CCCAGCATCTCCAT 235963 ||| |||||||||| Sbjct 3194396 CCCCGCATCTCCAT 3194383 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| |||||||||||||||||||||| || ||| || | Sbjct 790565 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGCACGGGGTTCGATC 790624 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 790625 CCCCGCATCTCCA 790637 Score = 84.2 bits (92), Expect = 7e-11 Identities = 152/219 (69%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685 |||| || || ||||| || ||| | || || || |||||||| |||||| ||| Sbjct 2429689 CAGCTTACTTCAATGACGCACAGAGGCAGGCTACCAAGGATGCTGGAGTCATTGCTGGGC 2429630 Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745 | |||||| ||||| ||||| || || || || || || ||||||||||| | || | Sbjct 2429629 TTAATGTTGCTAGAATAATTAACGAGCCAACGGCAGCTGCCATTGCATATGGTTTAGACA 2429570 Query 349746 AAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATG 349805 | | | ||| | || || || || || | ||||| | |||||||| || || |||| Sbjct 2429569 AGAAGGGTGGC---GAGAAGAACATCCTCGTCTTTGACCTCGGTGGTGGGACATTCGATG 2429513 Query 349806 T-ATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTT 349843 | | || | || || |||| | ||| | ||||| ||| Sbjct 2429512 TCAGCA-TTCTGACCATTGATAACGGAGTATTTGAGGTT 2429475 >seq17 Length=4297296 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 843587 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 843646 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 843647 CCCCGCATCTCCA 843659 >seq14 Length=5602277 Score = 91.5 bits (100), Expect = 4e-13 Identities = 136/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || || || || || ||| ||||| | |||| ||||| ||||||||| ||||| Sbjct 4896282 ACAGTGCCTGCATACTTCAACGATTCCCAGAGGACTGCGACAAAGGATGCTGGCCGCATT 4896223 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | ||||||| | || || || |||||||||||||| | | || ||||| Sbjct 4896222 GCCGGCCTGGATGTTCTTCGCATCATCAACGAACCCACTGCTGCCTCTCTGGCTTATGGT 4896163 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 |||| || | || || | | | | |||||| | ||||| | || ||||| || Sbjct 4896162 TTTGAGAAGAAGA---ACAATG---AGACCATTCTTGTGTTTGACCTCGGAGGTGGCACG 4896109 Query 349799 TTTGATGTATCA 349810 |||||||| ||| Sbjct 4896108 TTTGATGTTTCA 4896097 >seq4 Length=8682450 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| |||||||||||||||||||||| || ||| || | Sbjct 2492518 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGCACGGGGTTCGATC 2492459 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 2492458 CCCCGCATCTCCA 2492446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254011716060