Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7 214 2e-50 seq19 95.1 1e-14 >seq7 Length=7914316 Score = 214 bits (236), Expect = 2e-50 Identities = 385/554 (69%), Gaps = 11/554 (2%) Strand=Plus/Minus Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631 |||||||| | | |||| |||| ||||| ||| | || |||||| | | |||| Sbjct 1959484 GGTACCCGCAGATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGG 1959425 Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTACGACGAGCAGC 59688 || | |||||| || ||||| | | ||||| || |||| |||||||| | Sbjct 1959424 AGGTGGACCTCTCCCACGACCTCCGGCACTGGGAGCAGGACCTCACCGCCGACGAGCGCC 1959365 Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748 | ||||||| ||||| |||||||||||||| || || || ||| | || || Sbjct 1959364 ACTTCATCACCCACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACC 1959305 Query 59749 TAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC 59808 | | ||| ||||| |||||| | ||||||||||| | ||||||| | | Sbjct 1959304 TGGCSGGCCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCC 1959245 Query 59809 AG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTC 59867 || ||| || |||| ||||||||||||| |||| ||| | | || | | || Sbjct 1959244 AGATCGC-CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATC 1959186 Query 59868 AAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAA 59926 ||||| | || | ||||| | || ||||| ||| | || || |||||| || || Sbjct 1959185 AAGGACTCCGAGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGC-GTGGC 1959127 Query 59927 ACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGT 59984 | || || || |||||| | | ||||| || |||| ||| || || || | || Sbjct 1959126 CCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACTCCTCCGAG--TCCTTCGCCGAGCGC 1959069 Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 ||| | || || || ||||| || || ||||||||||| ||| ||||| || || ||| Sbjct 1959068 CTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTC 1959009 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 |||||||| ||||| ||||||||||| ||||| | |||||||||||||| || ||||| Sbjct 1959008 TGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGC 1958949 Query 60105 GACGAGGGCCTCCA 60118 |||||||||||||| Sbjct 1958948 GACGAGGGCCTCCA 1958935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||||| || || |||||||| |||||| | || |||||||| || || | ||||| ||| Sbjct 5450770 TTCTGCGCCATCTTCTGGCTGAAAAAGAGGGGGCTCATGCCTGGGCTCACATTCTCAAAC 5450711 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| || ||| |||| ||||||||||| Sbjct 5450710 GAGCTCATCTCCAGGGATGAGGGCCTCCA 5450682 >seq19 Length=3929835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115 ||| || || ||||||||||| ||||| || ||||| | |||||||| |||||||| Sbjct 2579337 CGAGGCGAGATTGCACACGGCAGTCTCCTCAGGGCTGGTGTATTCGATGATCTCTGTGCA 2579278 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 || ||| || |||||||| || || | || ||||||||||| ||| ||| |||| || Sbjct 2579277 CAGATTTGAAGACTTGATCGTCCCAAGATTTTTCTGGTTGCTTTTCCTGTTGCAGGAATC 2579218 Query 79176 CT 79177 || Sbjct 2579217 CT 2579216 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| ||||| |||||||| ||||||||| || | ||||||| ||| || Sbjct 2580451 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGGCTGGTGGA 2580392 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCC 78628 |||||| |||||||| || ||||| || || |||| Sbjct 2580391 GGCGGTGGGCATGGGGGCCACCAGGAGGGAGTTCC 2580357 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 20378 AACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAAC 20437 ||||| | || || || |||||||| |||||||| ||| ||||||| | || |||||| Sbjct 2580359 AACTCCCTCCTGGTGGCCCCCATGCCCACCGCCTCCACCAGCCAGATCCTCGGCAACAAC 2580418 Query 20438 GAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 ||| |||||||| ||||| ||||||||||| Sbjct 2580419 GAGTGCTTCGAGCCCTACACCTCCAACATCTAC 2580451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524662868800