Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq7 214 2e-50
seq19 95.1 1e-14
>seq7
Length=7914316
Score = 214 bits (236), Expect = 2e-50
Identities = 385/554 (69%), Gaps = 11/554 (2%)
Strand=Plus/Minus
Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631
|||||||| | | |||| |||| ||||| ||| | || |||||| | | ||||
Sbjct 1959484 GGTACCCGCAGATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGG 1959425
Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTACGACGAGCAGC 59688
|| | |||||| || ||||| | | ||||| || |||| |||||||| |
Sbjct 1959424 AGGTGGACCTCTCCCACGACCTCCGGCACTGGGAGCAGGACCTCACCGCCGACGAGCGCC 1959365
Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748
| ||||||| ||||| |||||||||||||| || || || ||| | || ||
Sbjct 1959364 ACTTCATCACCCACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACC 1959305
Query 59749 TAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC 59808
| | ||| ||||| |||||| | ||||||||||| | ||||||| | |
Sbjct 1959304 TGGCSGGCCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCC 1959245
Query 59809 AG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTC 59867
|| ||| || |||| ||||||||||||| |||| ||| | | || | | ||
Sbjct 1959244 AGATCGC-CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATC 1959186
Query 59868 AAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAA 59926
||||| | || | ||||| | || ||||| ||| | || || |||||| || ||
Sbjct 1959185 AAGGACTCCGAGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGC-GTGGC 1959127
Query 59927 ACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGT 59984
| || || || |||||| | | ||||| || |||| ||| || || || | ||
Sbjct 1959126 CCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACTCCTCCGAG--TCCTTCGCCGAGCGC 1959069
Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044
||| | || || || ||||| || || ||||||||||| ||| ||||| || || |||
Sbjct 1959068 CTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTC 1959009
Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104
|||||||| ||||| ||||||||||| ||||| | |||||||||||||| || |||||
Sbjct 1959008 TGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGC 1958949
Query 60105 GACGAGGGCCTCCA 60118
||||||||||||||
Sbjct 1958948 GACGAGGGCCTCCA 1958935
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089
||||| || || |||||||| |||||| | || |||||||| || || | ||||| |||
Sbjct 5450770 TTCTGCGCCATCTTCTGGCTGAAAAAGAGGGGGCTCATGCCTGGGCTCACATTCTCAAAC 5450711
Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118
||||| || ||| |||| |||||||||||
Sbjct 5450710 GAGCTCATCTCCAGGGATGAGGGCCTCCA 5450682
>seq19
Length=3929835
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115
||| || || ||||||||||| ||||| || ||||| | |||||||| ||||||||
Sbjct 2579337 CGAGGCGAGATTGCACACGGCAGTCTCCTCAGGGCTGGTGTATTCGATGATCTCTGTGCA 2579278
Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175
|| ||| || |||||||| || || | || ||||||||||| ||| ||| |||| ||
Sbjct 2579277 CAGATTTGAAGACTTGATCGTCCCAAGATTTTTCTGGTTGCTTTTCCTGTTGCAGGAATC 2579218
Query 79176 CT 79177
||
Sbjct 2579217 CT 2579216
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
||||||||||| ||||| |||||||| ||||||||| || | ||||||| ||| ||
Sbjct 2580451 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGGCTGGTGGA 2580392
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCC 78628
|||||| |||||||| || ||||| || || ||||
Sbjct 2580391 GGCGGTGGGCATGGGGGCCACCAGGAGGGAGTTCC 2580357
Score = 82.4 bits (90), Expect = 8e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 20378 AACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAAC 20437
||||| | || || || |||||||| |||||||| ||| ||||||| | || ||||||
Sbjct 2580359 AACTCCCTCCTGGTGGCCCCCATGCCCACCGCCTCCACCAGCCAGATCCTCGGCAACAAC 2580418
Query 20438 GAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470
||| |||||||| ||||| |||||||||||
Sbjct 2580419 GAGTGCTTCGAGCCCTACACCTCCAACATCTAC 2580451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524662868800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |