Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 141 1e-28 seq14 98.7 1e-15 seq4 87.8 2e-12 seq2 86.0 7e-12 seq19 82.4 8e-11 seq6 82.4 8e-11 >seq7 Length=7914316 Score = 141 bits (156), Expect = 1e-28 Identities = 335/494 (68%), Gaps = 17/494 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||| || |||| Sbjct 1958977 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAG 1959036 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGA--AG 74922 |||||||| ||||| || || |||||||| ||||| | ||||| | ||||| || Sbjct 1959037 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA---GGACTCGGAGGAG 1959093 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGC 74980 || ||||| | ||||| || || || || | |||| ||||| || || | || Sbjct 1959094 TCGATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCCA-CGCAGGGGACGGTGTCCACGGC 1959152 Query 74981 TTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 ||||||||| ||||| | |||| ||||||| | | || | | || ||| Sbjct 1959153 GCGGAAGAGGCGGGCCTTGGCCTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTA 1959212 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | |||| || || || |||| || ||| |||| | ||||||| | || ||||| | Sbjct 1959213 CATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGG 1959271 Query 75100 CAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGA 75157 | | ||| || ||||| |||| | | | ||||| | ||||||||||| || Sbjct 1959272 CGACCTGGACCTCCTTCATGAAGCGGCC--SGCCAGGTTCTCGAGCACGATGCCGTCGGA 1959329 Query 75158 GGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTT--TG 75215 ||| ||||| || || || || |||| ||||||||||| ||| | ||||| | || Sbjct 1959330 GGCCGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAGGTCCTG 1959389 Query 75216 -TCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAAT 75274 ||||| | | ||||| | | || | |||||| |||||||||| | | Sbjct 1959390 CTCCCAGTGCCGGAGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCTC 1959449 Query 75275 CGCCTTTTTGTACA 75288 |||||| ||||||| Sbjct 1959450 CGCCTTCTTGTACA 1959463 >seq14 Length=5602277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/269 (69%), Gaps = 11/269 (4%) Strand=Plus/Plus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCC 124566 |||||| ||| | ||| | | |||||| || ||||| || |||||||| ||| |||| Sbjct 2046553 TGTGCGACTCCTCGGTGGCGACCACGAAGTCGTCGGGTTTCTCCTGCTGCAGCATCAGCC 2046612 Query 124567 ACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGA 124626 ||||||| | |||||||||| | ||| |||||||| || |||| |||||| |||| Sbjct 2046613 ACATGGCCTCGACGTAGTCCCCGGCGAAGCCCCAGTCCCGGGAGGCACTCAGGTTGCCGA 2046672 Query 124627 GCTCGA--TTGGCTTGGCCGTCTTGTTCCACTCCGCCAAAC--CCAGTGTAATCTTGCGC 124682 | || ||| ||| | | | | | || | || || | || ||||| ||| Sbjct 2046673 GGAAGAGCTTGCGCTGG-AGACCGATGCGGATGCGGCCGACGGCCCGGGTGATCTTCCGC 2046731 Query 124683 GTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACAC 124739 || || || |||| ||||| || || ||||||||||| || ||||| | || Sbjct 2046732 GTGACGAAGTTCTCG---CCGCGGCGGGGGGATTCGTGGTTGAAGAGGATGCCGTTGCAG 2046788 Query 124740 GCAAACATCCCGTACGACTCGCGGTAGTT 124768 ||||| | ||||| | ||| |||||||| Sbjct 2046789 GCAAAGAGGCCGTAGGCCTCCCGGTAGTT 2046817 >seq4 Length=8682450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1642174 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1642115 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1642114 CTGAGCTATGAAAGC 1642100 >seq2 Length=11374105 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 791909 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 791968 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 791969 TGAGCTACGAGAGC 791982 >seq19 Length=3929835 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 |||||||| || ||||| || ||||| ||||| || || |||||| | ||||||||| Sbjct 2580359 AACTCCCTCCTGGTGGCCCCCATGCCCACCGCCTCCACCAGCCAGATCCTCGGCAACAAC 2580418 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 ||| |||||||| ||||| ||||||||||| Sbjct 2580419 GAGTGCTTCGAGCCCTACACCTCCAACATCTAC 2580451 >seq6 Length=8045491 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCTA-CCAAT 79683 ||||||| |||| |||| |||| |||||||||||||||||| ||||||||| |||| Sbjct 4713719 TGCTTTCATTGAGAATTGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTAGCCAAC 4713660 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 4713659 TGAGCTATGAAAGCA 4713645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215863196000