Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq7 141 1e-28
seq14 98.7 1e-15
seq4 87.8 2e-12
seq2 86.0 7e-12
seq19 82.4 8e-11
seq6 82.4 8e-11
>seq7
Length=7914316
Score = 141 bits (156), Expect = 1e-28
Identities = 335/494 (68%), Gaps = 17/494 (3%)
Strand=Plus/Plus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
||||| ||||| || || |||||||| | ||| |||||||| |||||| || ||||
Sbjct 1958977 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAG 1959036
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGA--AG 74922
|||||||| ||||| || || |||||||| ||||| | ||||| | ||||| ||
Sbjct 1959037 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA---GGACTCGGAGGAG 1959093
Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGC 74980
|| ||||| | ||||| || || || || | |||| ||||| || || | ||
Sbjct 1959094 TCGATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCCA-CGCAGGGGACGGTGTCCACGGC 1959152
Query 74981 TTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040
||||||||| ||||| | |||| ||||||| | | || | | || |||
Sbjct 1959153 GCGGAAGAGGCGGGCCTTGGCCTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTA 1959212
Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTG 75099
| |||| || || || |||| || ||| |||| | ||||||| | || ||||| |
Sbjct 1959213 CATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGG 1959271
Query 75100 CAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGA 75157
| | ||| || ||||| |||| | | | ||||| | ||||||||||| ||
Sbjct 1959272 CGACCTGGACCTCCTTCATGAAGCGGCC--SGCCAGGTTCTCGAGCACGATGCCGTCGGA 1959329
Query 75158 GGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTT--TG 75215
||| ||||| || || || || |||| ||||||||||| ||| | ||||| | ||
Sbjct 1959330 GGCCGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAGGTCCTG 1959389
Query 75216 -TCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAAT 75274
||||| | | ||||| | | || | |||||| |||||||||| | |
Sbjct 1959390 CTCCCAGTGCCGGAGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCTC 1959449
Query 75275 CGCCTTTTTGTACA 75288
|||||| |||||||
Sbjct 1959450 CGCCTTCTTGTACA 1959463
>seq14
Length=5602277
Score = 98.7 bits (108), Expect = 1e-15
Identities = 186/269 (69%), Gaps = 11/269 (4%)
Strand=Plus/Plus
Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCC 124566
|||||| ||| | ||| | | |||||| || ||||| || |||||||| ||| ||||
Sbjct 2046553 TGTGCGACTCCTCGGTGGCGACCACGAAGTCGTCGGGTTTCTCCTGCTGCAGCATCAGCC 2046612
Query 124567 ACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGA 124626
||||||| | |||||||||| | ||| |||||||| || |||| |||||| ||||
Sbjct 2046613 ACATGGCCTCGACGTAGTCCCCGGCGAAGCCCCAGTCCCGGGAGGCACTCAGGTTGCCGA 2046672
Query 124627 GCTCGA--TTGGCTTGGCCGTCTTGTTCCACTCCGCCAAAC--CCAGTGTAATCTTGCGC 124682
| || ||| ||| | | | | | || | || || | || ||||| |||
Sbjct 2046673 GGAAGAGCTTGCGCTGG-AGACCGATGCGGATGCGGCCGACGGCCCGGGTGATCTTCCGC 2046731
Query 124683 GTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACAC 124739
|| || || |||| ||||| || || ||||||||||| || ||||| | ||
Sbjct 2046732 GTGACGAAGTTCTCG---CCGCGGCGGGGGGATTCGTGGTTGAAGAGGATGCCGTTGCAG 2046788
Query 124740 GCAAACATCCCGTACGACTCGCGGTAGTT 124768
||||| | ||||| | ||| ||||||||
Sbjct 2046789 GCAAAGAGGCCGTAGGCCTCCCGGTAGTT 2046817
>seq4
Length=8682450
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682
|||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 1642174 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1642115
Query 79683 TTGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 1642114 CTGAGCTATGAAAGC 1642100
>seq2
Length=11374105
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 791909 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 791968
Query 79684 TGAGCTACGAAAGC 79697
|||||||||| |||
Sbjct 791969 TGAGCTACGAGAGC 791982
>seq19
Length=3929835
Score = 82.4 bits (90), Expect = 8e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546
|||||||| || ||||| || ||||| ||||| || || |||||| | |||||||||
Sbjct 2580359 AACTCCCTCCTGGTGGCCCCCATGCCCACCGCCTCCACCAGCCAGATCCTCGGCAACAAC 2580418
Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579
||| |||||||| ||||| |||||||||||
Sbjct 2580419 GAGTGCTTCGAGCCCTACACCTCCAACATCTAC 2580451
>seq6
Length=8045491
Score = 82.4 bits (90), Expect = 8e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCTA-CCAAT 79683
||||||| |||| |||| |||| |||||||||||||||||| ||||||||| ||||
Sbjct 4713719 TGCTTTCATTGAGAATTGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTAGCCAAC 4713660
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 4713659 TGAGCTATGAAAGCA 4713645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215863196000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |