Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16 174 2e-38 seq7 145 9e-30 seq2 145 9e-30 seq8 136 5e-27 seq3 118 1e-21 seq18 111 2e-19 seq5 93.3 5e-14 seq12 86.0 7e-12 >seq16 Length=4450370 Score = 174 bits (192), Expect = 2e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| |||||||||||||| || || | ||||| ||||| Sbjct 3338304 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCTCG 3338363 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||||||||| || |||||||||||||| || || || |||||| Sbjct 3338364 GACACCATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3338423 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | || ||||| || |||||||| Sbjct 3338424 CAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAAC 3338483 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| | ||||| Sbjct 3338484 ATCCAGAAGGAGTCCACGCTCCACCTGGTCCTTCGTCT 3338521 >seq7 Length=7914316 Score = 145 bits (160), Expect = 9e-30 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||||| | Sbjct 4181103 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 4181162 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || |||||| ||||||| || || || |||||| Sbjct 4181163 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 4181222 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | | || || || ||||| ||| Sbjct 4181223 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 4181282 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || |||||||| Sbjct 4181283 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 4181329 >seq2 Length=11374105 Score = 145 bits (160), Expect = 9e-30 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||||| | Sbjct 483865 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 483806 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || |||||| ||||||| || || || |||||| Sbjct 483805 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 483746 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | | || || || ||||| ||| Sbjct 483745 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 483686 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || |||||||| Sbjct 483685 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 483639 >seq8 Length=7641483 Score = 136 bits (150), Expect = 5e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || || || ||||| ||||| Sbjct 6352119 ATGCAGATATTCGTGAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCY 6352060 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || || || || |||||| Sbjct 6352059 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATACCACCGGACCAG 6352000 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | || |||||||| ||||| || Sbjct 6351999 CAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCGGACTACAAC 6351940 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || ||||| || Sbjct 6351939 ATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCGCCTCCGCGGAGG 6351893 >seq3 Length=8976907 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| |||||||| || |||||||| ||||| Sbjct 8500627 ATGCAGATCTTCGTGAAGACTCTCACCGGGAAGACTATCACCCTTGAGGTGGAGTCCTCC 8500568 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 8500567 GATACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 8500508 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 ||| | || || || || || ||||| || ||||| Sbjct 8500507 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGA 8500473 >seq18 Length=4131207 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 ||||||||||||||| || ||||||||||||||| | | || |||||||| ||||| || Sbjct 771226 TCAGGACAAGGAGGGCATCCCTCCAGACCAGCAGAGATTGATATTTGCTGGGAAGCAGCT 771167 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||| | || || || |||||||| || |||| ||||| || || ||||| || || Sbjct 771166 GGAGGACGGCCGCACTCTTGCAGACTACAACATCCAGAAGGAGTCGACCCTTCACCTGGT 771107 Query 27615 CTTG 27618 |||| Sbjct 771106 CTTG 771103 >seq5 Length=8147712 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 146788 ACCACCTACTACCAGATGCAGACGCGCAGCGCCGACGAGCCGATGACGGCGTTCATCACC 146847 ||||||||||||||| ||||||| ||||||||||||||||| ||||| | ||| ||||| Sbjct 7219086 ACCACCTACTACCAGCTGCAGACCCGCAGCGCCGACGAGCCCATGACCACCTTCGTCACC 7219027 Query 146848 TGCCTGAATTGCTCTAACCGCTGGAAGTGCT 146878 ||| | | ||| |||| |||||||| || Sbjct 7219026 TGCGTCGAGTGCAACAACCACTGGAAGTTCT 7218996 >seq12 Length=5901629 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| || || || || |||||||||||||| | ||| Sbjct 200910 GGGATTCCCCCCGACCAGCAGCGTCTGATATTCGCCGGCAAGCAACTCGAGGACGGGCGT 200851 Query 27568 ACCCTAGCAGACTATAATGTCCA-AAAGG 27595 ||||| || ||||| ||| |||| ||||| Sbjct 200850 ACCCTTGCGGACTACAATATCCAGAAAGG 200822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310257422400