Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq16 100 2e-16 >seq16 Length=4450370 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| ||||| ||| |||||| || |||||||| || | Sbjct 3338531 GCCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGC 3338472 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 3338471 GAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 3338412 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| | ||||| Sbjct 3338411 GATGCCCTCCTTGTCCTGGATC-TTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 3338353 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || ||||| | || || || || |||||||| Sbjct 3338352 CCTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729523284660