Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 7e-25
seq8 120 4e-22
seq6 120 4e-22
seq19 95.1 1e-14
seq3 82.4 9e-11
>seq2
Length=11374105
Score = 129 bits (142), Expect = 7e-25
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 176440 TACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTT 176499
|||||||| || | |||||||| |||| | | | || |||||||||||||| ||||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 176500 GCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAA 176559
||||| || || || ||| | || || | || |||||| | |||| || | ||||||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 176560 GGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACT 176608
||| ||| ||||||||||||||||| || ||||| ||||| |||||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq8
Length=7641483
Score = 120 bits (132), Expect = 4e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 176908 TGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAAC 176967
|| || ||||||| ||| | ||| || | || ||||| |||||||| |||| |||| |
Sbjct 525064 TGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCAT 525123
Query 176968 TTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTT 177027
|| ||||| || | | ||||| | || || ||| || ||| |||||| |
Sbjct 525124 TTTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATC 525183
Query 177028 AACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTT 177087
|||| ||| || |||||||||||||| ||||| || ||||||||| |||||||||| ||
Sbjct 525184 AACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTA 525243
Query 177088 GACCTTGCTGC 177098
||| | |||||
Sbjct 525244 GACTTAGCTGC 525254
>seq6
Length=8045491
Score = 120 bits (132), Expect = 4e-22
Identities = 118/152 (78%), Gaps = 3/152 (2%)
Strand=Plus/Plus
Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589
|| |||||| | |||| || | ||||||||| ||| ||||||||| || |||| ||
Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624
Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649
||||| |||||||||||||| || |||||||| | |||| | |||| || ||||||
Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCAC 2591681
Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGTGTT 176681
|||||||| ||| | || ||||| ||||| ||
Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATT 2591713
>seq19
Length=3929835
Score = 95.1 bits (104), Expect = 1e-14
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069
|| |||| ||||| | |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522
Query 177070 GCTCACAACTTCCCACTTGACCTTGCT 177096
|||||||||||| | || ||| | |||
Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGCT 3082549
>seq3
Length=8976907
Score = 82.4 bits (90), Expect = 9e-11
Identities = 148/215 (69%), Gaps = 11/215 (5%)
Strand=Plus/Plus
Query 176356 GAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT---A 176412
||||| ||| ||||| | ||| | |||||||| || || ||| | || |||| |
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 176413 TTC--CACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAATGGGAACTTAGTT 176467
||| |||||| | | ||| | ||||| |||||| || | |||||||||||||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGT---AGCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849
Query 176468 ACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGA 176527
| | || || |||| ||||||||| ||||||||| || || || || | || || |
Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909
Query 176528 TGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562
|| ||||| | |||| | | |||||||||
Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGGA 715944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603494249126400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |