Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-25 seq8 120 4e-22 seq6 120 4e-22 seq19 95.1 1e-14 seq3 82.4 9e-11 >seq2 Length=11374105 Score = 129 bits (142), Expect = 7e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 176440 TACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTT 176499 |||||||| || | |||||||| |||| | | | || |||||||||||||| |||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 176500 GCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAA 176559 ||||| || || || ||| | || || | || |||||| | |||| || | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 176560 GGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACT 176608 ||| ||| ||||||||||||||||| || ||||| ||||| ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 120 bits (132), Expect = 4e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 176908 TGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAAC 176967 || || ||||||| ||| | ||| || | || ||||| |||||||| |||| |||| | Sbjct 525064 TGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCAT 525123 Query 176968 TTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTT 177027 || ||||| || | | ||||| | || || ||| || ||| |||||| | Sbjct 525124 TTTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATC 525183 Query 177028 AACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTT 177087 |||| ||| || |||||||||||||| ||||| || ||||||||| |||||||||| || Sbjct 525184 AACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTA 525243 Query 177088 GACCTTGCTGC 177098 ||| | ||||| Sbjct 525244 GACTTAGCTGC 525254 >seq6 Length=8045491 Score = 120 bits (132), Expect = 4e-22 Identities = 118/152 (78%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589 || |||||| | |||| || | ||||||||| ||| ||||||||| || |||| || Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624 Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 ||||| |||||||||||||| || |||||||| | |||| | |||| || |||||| Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCAC 2591681 Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGTGTT 176681 |||||||| ||| | || ||||| ||||| || Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATT 2591713 >seq19 Length=3929835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| ||||| | |||||||| ||||||||||||||||||||||| || |||||| Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522 Query 177070 GCTCACAACTTCCCACTTGACCTTGCT 177096 |||||||||||| | || ||| | ||| Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGCT 3082549 >seq3 Length=8976907 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/215 (69%), Gaps = 11/215 (5%) Strand=Plus/Plus Query 176356 GAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT---A 176412 ||||| ||| ||||| | ||| | |||||||| || || ||| | || |||| | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 176413 TTC--CACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAATGGGAACTTAGTT 176467 ||| |||||| | | ||| | ||||| |||||| || | ||||||||||||| Sbjct 715793 TTCTACACTTCTTAMTTGGTGT---AGCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849 Query 176468 ACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGA 176527 | | || || |||| ||||||||| ||||||||| || || || || | || || | Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909 Query 176528 TGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562 || ||||| | |||| | | ||||||||| Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGGA 715944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603494249126400