Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq2 219 5e-52 seq8 131 2e-25 seq6 113 6e-20 seq18 111 2e-19 seq16 100 4e-16 seq19 86.0 8e-12 seq7 84.2 3e-11 >seq2 Length=11374105 Score = 219 bits (242), Expect = 5e-52 Identities = 397/579 (69%), Gaps = 18/579 (3%) Strand=Plus/Plus Query 183652 ACATCATCACCTAGCAATAGCAGTTATGTTTATCATTGCAGGTCATATGTATCGCACAAA 183711 ||| ||||| |||| || || || | || | || || |||||||||||| | || || Sbjct 8386502 ACACCATCATTTAGCCATTGCTATTCTTTTCCTGATAGCTGGTCATATGTATAGGACCAA 8386561 Query 183712 CTGGGGTATTGGTCAATCAATGAAAGAGATATTAGATGGTCAGAATGGT----TTCCCA- 183766 ||||||||||||||| || |||| || ||||| | ||| || ||| || || Sbjct 8386562 CTGGGGTATTGGTCATGGCTTGGAAGACATTTTAGAGGCTCATAAAGGTCCATTTACCGG 8386621 Query 183767 -CAGGGTGTCACACACAGAGGATTATATGAATTTCTAGCAGAATCAAGACATGCACAACT 183825 ||||| || | ||| | |||||| | ||| || ||| | ||||| ||| | Sbjct 8386622 TCAGGGC------CATAAAGGTCTCTATGAAATCCTAACAAYGTCATGGCATGCTCAATT 8386675 Query 183826 ATCACTGAATCTGGCAATGCTAGGATCTATCAGTATCATAGTTTCACATCATATGTATGC 183885 ||| || || || || ||| |||| ||| | | || || || | || || ||||| | Sbjct 8386676 ATCTCTTAACCTAGCTATGTTAGGCTCTTTAACCATTATTGTAGCTCACCACATGTACRC 8386735 Query 183886 AATGCCACCTTATCCATATCTTGGTATTGAATATCCAACAGTAGTAGGATTATTCACCCA 183945 ||||| ||||||||||| | | || ||| ||| ||| | | ||| ||||| || Sbjct 8386736 CATGCCCCCTTATCCATACTTAGCTACTGACTATGGTACACAACTTTCATTGTTCACACA 8386795 Query 183946 TCATATGTGGATAGGTGGTTTTCTTATTGTGGGTGCATCAGCACATGCTTCAATTGCTAT 184005 |||||||||||| ||||| ||||| || || || || | |||||||| | ||| ||| Sbjct 8386796 TCATATGTGGATTGGTGGATTTCTCATAGTTGGAGCTGCTGCACATGCARCCATTTTTAT 8386855 Query 184006 GATAAGAGACTATAATCC---TGTTCAACATATGGGAAATGTATTAGATAGAATACTTAA 184062 | |||||||||| |||| | || | | | | || |||||||| | | |||| Sbjct 8386856 GGTAAGAGACTACGATCCAATTACTCGATACAACG---ATCTATTAGATCGTGTCCTTAG 8386912 Query 184063 ATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAG 184122 | ||||||||||| || | |||||||| || || || |||||||||| | Sbjct 8386913 GCACCGCGATGCAATCATATCACATCTCAACTGGGTCTGTATATTCCTAGGTTTTCACAA 8386972 Query 184123 TTTTGGTCTTTATATTCACAATGATATTATGAGAGCATTGGGTAGACCTAATGATCTATT 184182 ||| | |||||||||| ||||||| ||||| || || || | ||| | ||| | || Sbjct 8386973 TTTCAGCTTTTATATTCATAATGATACCATGAGTGCTTTAGGGCGTCCTCAAGATATGTT 8387032 Query 184183 CAGTGATACAGCAATACAATTACAACCTGTATTTGCACA 184221 ||||| | |||||||||||||| | ||||| || Sbjct 8387033 TTCAGATACCGTTATACAATTACAACCGATCTTTGCCCA 8387071 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 189992 TACATGGGAAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 190051 |||||||| | |||||||| || | | | | |||||| | |||||||| |||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 190052 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG 190111 || |||||||| || ||| | || || ||| || ||| | | ||||| ||||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 190112 GGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACT 190160 || || ||||||||||||||| |||| || || ||||| ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 131 bits (144), Expect = 2e-25 Identities = 183/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 185972 CAGTTAGGTCTTGCACTTGCATCTCTAGGTGTTGTTACTAGTCTGGTGGCACAACATATG 186031 || ||||||||||| || || ||| |||| ||||||||| | | || || ||||| ||| Sbjct 4205129 CAATTAGGTCTTGCTCTAGCTTCTTTAGGGGTTGTTACTTCTTTAGTAGCTCAACACATG 4205188 Query 186032 TACTCAATGCCATCCTATGCTTTCATAGCACAGGCGCATACTACGCAAGCTGCTCTATAT 186091 ||||| | || | ||||| || ||||| || | |||||| ||||||||| ||||| Sbjct 4205189 TACTCCTTACCTRCTTATGCATTTATAGCCCAAGACTTTACTACTCAAGCTGCTTTATAT 4205248 Query 186092 GTTCATCATCAATACATTGCAACTGCTC-TGATGGTTGGTGCTTTTGCGCATGGAGCAAT 186150 |||||| ||||||||||| | | || | ||| || || ||||| |||||||| || Sbjct 4205249 ACTCATCACCAATACATTGC-AGGGTTCATCATGACAGGAGCCTTTGCTCATGGAGCTAT 4205307 Query 186151 ATTTTTTGTTAGAGACTTTGATCCTACTCTGAATAAGGACAATGTTCTTGATAGAATGCT 186210 ||| || ||||||| | |||| | |||| | || ||||| | | |||||| | Sbjct 4205308 ATTCTTCATTAGAGATTACAATCCGGAACAGAATGAAGATAATGTATTGGCAAGAATGTT 4205367 Query 186211 ACAGCACAAAGAAG 186224 | || || |||| Sbjct 4205368 AGCCCATAAGGAAG 4205381 >seq6 Length=8045491 Score = 113 bits (124), Expect = 6e-20 Identities = 114/148 (77%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 190081 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGG 190140 ||| || ||| | | ||||| ||||||| || || ||||||||| || || |||| Sbjct 2591564 TGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGG 2591623 Query 190141 TATCTCAGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCA 190200 || || ||||||||||||||||| |||||||| | |||||| | ||||||||||| Sbjct 2591624 AATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCA 2591680 Query 190201 CCCATTCCATATGGCAGGTGTAGCAGGT 190228 ||||||||| ||| ||| ||||| ||| Sbjct 2591681 CCCATTCCACATGTTAGGCGTAGCTGGT 2591708 >seq18 Length=4131207 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 184751 TTCAGTTTGATGTTCCTATGGAGTGGTAGAGGATACTGGCAAGAGTTGATAGAGTCTATT 184810 |||| ||| ||||| |||| ||||| | || || || ||||| | || || |||||| Sbjct 4020396 TTCAATTTAATGTTTCTATTCAGTGGCCGTGGTTATTGACAAGAACTTATTGAATCTATT 4020337 Query 184811 GCTTGGGCACATAACAAATTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCAATT 184870 |||||||||||||||||||||| |||| ||| | | | | || | ||| || ||| Sbjct 4020336 ATTTGGGCACATAACAAATTAAAAGTTGCTCCTGCTACTTAGCCTAAAGCCTTGAGCATT 4020277 Query 184871 ACACAAGGACGTGCTGTTGGAGTTGCACACTTCTTACTTGGAGGTATTGCCACA 184924 ||||||||||||||| ||||| | || | | | || || || ||||||||| Sbjct 4020276 GTACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACA 4020223 >seq16 Length=4450370 Score = 100 bits (110), Expect = 4e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 188653 TATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGA-GGATACACTATGAGTT 188711 |||||||||||||||||||| | ||||| | || | || |||| || | ||| || Sbjct 2636853 TATCCTTATGAAAAATTAATCACATCAGA-ACATTTCCGGGCTTGGATTCATTTTGAATT 2636795 Query 188712 TGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTATTAATTTACCTGTAGT 188771 ||||||||||||||||||||||||||||| || |||||||| ||| |||| || || Sbjct 2636794 CGATAAATGTATTGCTTGTGAAGTATGTGTTCATGTGTGTCCTATAAATCTACCCGTTGT 2636735 Query 188772 TGATTGG 188778 |||||| Sbjct 2636734 AGATTGG 2636728 >seq19 Length=3929835 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 190562 ACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAAAGAAAT 190621 || |||| ||| || | ||| | || ||||||||||||||||| ||||||||| | ||| Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522 Query 190622 GCACACAACTTCCCACTAGACCTAGCT 190648 || ||||||||| | |||||| ||||| Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGCT 3082549 >seq7 Length=7914316 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 189878 GCTATTGGTCTACACTTCT-ACCCAATCTGGGAAGCAGCAACAGTAGATGAGTGGCTTTA 189936 ||||||||| | || || | | |||||||||||||||||||| || ||||||||| || Sbjct 495565 GCTATTGGTTTGCATTTTTTATCCAATCTGGGAAGCAGCAACTGTTGATGAGTGGTAATA 495506 Query 189937 CAATGGTGGTCCTTAC 189952 |||||||||||||||| Sbjct 495505 CAATGGTGGTCCTTAC 495490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631427042143200