Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq16 181 2e-40 seq8 178 3e-39 seq7 154 3e-32 seq2 154 3e-32 seq3 127 5e-24 seq12 91.5 3e-13 seq1 89.7 1e-12 seq18 87.8 4e-12 >seq16 Length=4450370 Score = 181 bits (200), Expect = 2e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || ||||||||||| || || ||||| | || || Sbjct 3338515 AGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCC 3338456 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || || | || ||||||||| Sbjct 3338455 TCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 3338396 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| ||| || ||||| | ||||| ||| Sbjct 3338395 TGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTC 3338336 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGG 211121 || || || |||||||| || || | |||||| | |||| Sbjct 3338335 TTGCCGGTAAGAGTCTTGACGAAGATCTGCATCTGATGG 3338297 >seq8 Length=7641483 Score = 178 bits (196), Expect = 3e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || ||||| ||||| | || || Sbjct 6351908 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCC 6351967 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| || || | |||||||||||| Sbjct 6351968 TCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCC 6352027 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || |||||||| ||||||||| Sbjct 6352028 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTC 6352087 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 6352088 TTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 >seq7 Length=7914316 Score = 154 bits (170), Expect = 3e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || ||||| || || || || || || || || || Sbjct 4181314 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCC 4181255 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| || || | || |||| |||| Sbjct 4181254 TCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCC 4181195 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| |||||||| || |||||||| ||||||||| Sbjct 4181194 TGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTC 4181135 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 4181134 TTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 4181103 >seq2 Length=11374105 Score = 154 bits (170), Expect = 3e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || ||||| || || || || || || || || || Sbjct 483654 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCC 483713 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| || || | || |||| |||| Sbjct 483714 TCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCC 483773 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| |||||||| || |||||||| ||||||||| Sbjct 483774 TGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTC 483833 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 483834 TTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 483865 >seq3 Length=8976907 Score = 127 bits (140), Expect = 5e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || |||||||||||||| |||||||| || | || ||||| || || | || ||| Sbjct 8500470 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCC 8500529 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| || ||||| |||||||| || ||| || ||||| || ||| Sbjct 8500530 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||||||||| || || | |||||| Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| ||||||||||| |||||||| ||||| | || || Sbjct 8500006 AGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCCGCCAGGGTGCGGCCGTCC 8500065 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAG 210988 |||||||||||||| |||||||| || Sbjct 8500066 TCCAGCTGCTTGCCGGCGAAGATCAG 8500091 >seq12 Length=5901629 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct 201081 CCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTACTCTCCACCTCG 201140 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||||||||| || || || ||||| || || | ||||||| Sbjct 201141 AGGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATT 201185 >seq1 Length=14772968 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| ||||| || ||||| || || ||| || |||||| Sbjct 5905284 CCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGCTGCTCTCGACCTCG 5905343 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||| || ||||| || || | |||||| || Sbjct 5905344 AGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 5905390 >seq18 Length=4131207 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || | ||| |||||||| || ||||| || |||||||| || || ||||| || | Sbjct 771098 AGCCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGG 771157 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || ||||||||||| || || || || | | || ||||| ||||| | || ||| Sbjct 771158 CCGTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGGATGCCCTCC 771217 Query 211017 TTGTCCTG 211024 |||||||| Sbjct 771218 TTGTCCTG 771225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151702967300