Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq16 104 2e-17
>seq16
Length=4450370
Score = 104 bits (114), Expect = 2e-17
Identities = 165/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| |||||| || | || | |||| || |||||| ||| || || || ||||| ||
Sbjct 3338534 CATGCCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTC 3338475
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
||| || || || |||| || ||||| || || || || || |||||||||||||| |
Sbjct 3338474 GGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGG 3338415
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232
||| | || ||| |||||| ||| || || | ||| | | | || || ||||
Sbjct 3338414 GGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTGTCCGAGGACT 3338356
Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|||| |||| |||||| | || || || || || || || ||||| |||||||
Sbjct 3338355 CCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATCT 3338302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545495298260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |