Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 8e-15 >seq8 Length=7641483 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || | Sbjct 6352119 ATGCAGATATTCGTGAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCY 6352060 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| |||| || || || Sbjct 6352059 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATACCACCGGACCAG 6352000 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || || || |||| || || ||| || |||||| Sbjct 6351999 CAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCGGACTACAAC 6351940 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 6351939 ATCCAGAAGGAGTCGAC 6351923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009517610160