Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq7 163 7e-35
seq2 163 7e-35
seq16 154 4e-32
seq8 131 4e-25
seq6 100 7e-16
>seq7
Length=7914316
Score = 163 bits (180), Expect = 7e-35
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| || || || || |||| |||||| ||||| | ||||||||| ||
Sbjct 4181314 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCC 4181255
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||||||||| |||||||| || || || ||||| ||||| || || |||| |||
Sbjct 4181254 TCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCC 4181195
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||| ||||| || | || || || | ||||||||||
Sbjct 4181194 TGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTC 4181135
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||||| || || | ||| | |||||
Sbjct 4181134 TTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 4181103
>seq2
Length=11374105
Score = 163 bits (180), Expect = 7e-35
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| || || || || |||| |||||| ||||| | ||||||||| ||
Sbjct 483654 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCC 483713
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||||||||| |||||||| || || || ||||| ||||| || || |||| |||
Sbjct 483714 TCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCC 483773
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||| ||||| || | || || || | ||||||||||
Sbjct 483774 TGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTC 483833
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||||| || || | ||| | |||||
Sbjct 483834 TTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 483865
Score = 98.7 bits (108), Expect = 2e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 372637 AGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATA 372696
|| |||||||||||||||| |||||||||||||||| ||||||| |||| ||||||||||
Sbjct 1806309 AGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATA 1806368
Query 372697 GGGTCTGACAC 372707
| || ||||||
Sbjct 1806369 GAGTYTGACAC 1806379
>seq16
Length=4450370
Score = 154 bits (170), Expect = 4e-32
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| ||||| || || |||| || || ||||| | || | || ||
Sbjct 3338515 AGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCC 3338456
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||||||||| |||||||| || || || ||||| || || || || ||||||||
Sbjct 3338455 TCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 3338396
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| ||||||||||| |||| ||||| || | |||||| |||
Sbjct 3338395 TGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTC 3338336
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGG 225720
||||| || | ||| || | ||| | ||||| | ||||
Sbjct 3338335 TTGCCGGTAAGAGTCTTGACGAAGATCTGCATCTGATGG 3338297
>seq8
Length=7641483
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || || || || || |||| ||||| || || | |||| || ||
Sbjct 6351908 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCC 6351967
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||||||||| |||||||| || || || ||||| || || || |||||||||||
Sbjct 6351968 TCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCC 6352027
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | ||||| || | |||||||||
Sbjct 6352028 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTC 6352087
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| | || || | ||| | |||||
Sbjct 6352088 TTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119
>seq6
Length=8045491
Score = 100 bits (110), Expect = 7e-16
Identities = 99/127 (78%), Gaps = 1/127 (1%)
Strand=Plus/Minus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| || || ||| ||||||||||||| ||||||||||| | | |
Sbjct 1732554 TGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 1732495
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854
|||||| || |||||||||| | |||||| |||| | | |||| || ||| || ||||
Sbjct 1732494 CCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACGC 1732435
Query 7855 GTTAGCT 7861
|||||||
Sbjct 1732434 GTTAGCT 1732428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530894413880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |