Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 8e-16 >seq4 Length=8682450 Score = 98.7 bits (108), Expect = 8e-16 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 49791 CCCGGTGGACCCGTACCCCGTGTCGCCCCTGTCGGTAGAGTCCAGGCTGTCTACCTCCAT 49850 ||| ||||| || |||| | |||||||| |||| ||||||||||| || ||||| | Sbjct 1474513 CCCAGTGGATCCAAACCCTCCGGCGCCCCTGACGGTGGAGTCCAGGCTCTCGACCTCGAC 1474454 Query 49851 GACAGGAGGAGACTCGTATCTCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGAC 49910 || || | | | |||||||| | | ||| || | || ||||| ||| || Sbjct 1474453 CACCTCTGGCGTCATGATTCTCTCGATAATCAACTGCGCGACCCGATCGCCGGTCTTCAC 1474394 Query 49911 CCGAAAGGCATCACACCCAAA--GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCG 49968 | ||| ||| ||| || | ||| ||||| |||||||||| | ||| | |||||| Sbjct 1474393 CTCAAAAGCA--ACATCCGAGTGGTTGAACAGGATGACGCCGATGGGGCCGCGGTAGTCC 1474336 Query 49969 GGGTCCACCACCCCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGA 50028 ||| ||||| || || |||||||| || | | ||| ||||| || ||||||||| Sbjct 1474335 ACGTCTACCACGCCTGCTCCGACGTCAATGGAGTGCTTCCACGCCAGTCCCGACCTGGGA 1474276 Query 50029 GCCAC 50033 || || Sbjct 1474275 GCTAC 1474271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163100997720