Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq8 134 2e-26 seq2 134 2e-26 seq3 118 1e-21 seq19 91.5 2e-13 >seq8 Length=7641483 Score = 134 bits (148), Expect = 2e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 183994 ATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTC 184053 || ||||||| |||| | ||| |||| |||||||| || ||||| || | ||| | || Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126 Query 184054 AACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAAC 184113 ||||| ||||| |||| || ||||||| | || | ||| | || | ||||| Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186 Query 184114 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGAC 184173 | |||| |||||| |||||||||||||| || ||||||||| ||||||||||||| ||| Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246 Query 184174 CTTGCTGCTGCTGA 184187 | ||||| | ||| Sbjct 525247 TTAGCTGCAGTTGA 525260 >seq2 Length=11374105 Score = 134 bits (148), Expect = 2e-26 Identities = 133/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579 |||||||||||||||||||||||| | || |||| | ||||||||||||||||| | Sbjct 4329604 TGCTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCT 4329663 Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| || ||||| || ||||| || ||||| ||| || |||| ||| | ||| Sbjct 4329664 GTTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGT 4329723 Query 183640 CAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACT 183691 ||||| |||| |||||||||||| || || || ||| || || |||| Sbjct 4329724 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 118 bits (130), Expect = 1e-21 Identities = 153/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 183439 GAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTC--- 183495 ||||| |||| | ||| ||||| | || || || ||||||||| | || | || Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 183496 TTC--CACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 ||| |||||| | |||| || |||||||||| ||||||||||||| | || || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| ||||||| ||||||||| |||||| ||| || ||||| || ||||| || | Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGG 183644 |||| || || |||| | | | |||||||| Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq19 Length=3929835 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 184082 GTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGC 184141 |||| | ||||| ||||| || || ||||||||||| ||||| |||||||| |||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 184142 ACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 184179 | || |||||||||||||||||| |||| ||| | ||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622070244482400