Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq8 138 1e-27 seq3 114 1e-20 seq19 87.8 2e-12 >seq2 Length=11374105 Score = 147 bits (162), Expect = 2e-30 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 164255 TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTA 164314 ||||||||||||||||||||||| || |||| | |||||||||||||||||| || Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 164315 GCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAA 164374 ||||| || |||||||| || || || | ||| || ||| || |||| ||| | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 164375 GGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACT 164423 || ||| ||||||| |||||||| || || ||||| || ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 138 bits (152), Expect = 1e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 164724 GTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 164783 |||| ||||||| |||| | || |||| || ||||| |||||||| |||| |||| | | Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124 Query 164784 TCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCA 164843 | ||||| ||||| | || || | ||||||| | || | ||| | || | ||| Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184 Query 164844 ACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCG 164903 ||| |||| ||| || |||||||||||||| || ||||||||| ||||||||||||| | Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244 Query 164904 ACCTTGCTGCTGCTGA 164919 || | ||||| | ||| Sbjct 525245 ACTTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 114 bits (126), Expect = 1e-20 Identities = 174/243 (72%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 164200 ||||| ||| |||| || |||| | ||||| ||| | | || | ||| | ||| Sbjct 715708 GCTATAGGTTTGCATTTTGACCCAA-----GAAGCCGCATATGTTGATTAGTGGTTATAC 715762 Query 164201 AACGGTGGTCCTTTCCAACTCGTTGTG---TTC--CACTTCCTGATTGGCAT--CTATGC 164253 || || ||||||| | | || |||| ||| |||||| | |||| | || ||| Sbjct 715763 AATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTTAMTTGGTGTAGCT-TGC 715821 Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 | |||||| |||||||||||||||| || |||||| ||||||| |||||||||| || Sbjct 715822 T-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCATCCTTGGATTGCTGT 715880 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373 ||||| || |||||||| || || || | ||| || || || |||| | | | ||||| Sbjct 715881 TGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTGATCTACCTTATTGGTCA 715940 Query 164374 AGG 164376 ||| Sbjct 715941 AGG 715943 >seq19 Length=3929835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 164814 GTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGC 164873 |||| | ||||| ||||| || || ||||||||||| || || |||||||| |||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 164874 ACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 164911 | || |||||||||||||||||| |||| ||| | ||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557654260586400