Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 2e-30
seq8 138 1e-27
seq3 114 1e-20
seq19 87.8 2e-12
>seq2
Length=11374105
Score = 147 bits (162), Expect = 2e-30
Identities = 134/169 (79%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 164255 TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTA 164314
||||||||||||||||||||||| || |||| | |||||||||||||||||| ||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 164315 GCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAA 164374
||||| || |||||||| || || || | ||| || ||| || |||| ||| | ||||||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 164375 GGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACT 164423
|| ||| ||||||| |||||||| || || ||||| || |||||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq8
Length=7641483
Score = 138 bits (152), Expect = 1e-27
Identities = 148/196 (76%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 164724 GTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 164783
|||| ||||||| |||| | || |||| || ||||| |||||||| |||| |||| | |
Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124
Query 164784 TCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCA 164843
| ||||| ||||| | || || | ||||||| | || | ||| | || | |||
Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184
Query 164844 ACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCG 164903
||| |||| ||| || |||||||||||||| || ||||||||| ||||||||||||| |
Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244
Query 164904 ACCTTGCTGCTGCTGA 164919
|| | ||||| | |||
Sbjct 525245 ACTTAGCTGCAGTTGA 525260
>seq3
Length=8976907
Score = 114 bits (126), Expect = 1e-20
Identities = 174/243 (72%), Gaps = 14/243 (6%)
Strand=Plus/Plus
Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 164200
||||| ||| |||| || |||| | ||||| ||| | | || | ||| | |||
Sbjct 715708 GCTATAGGTTTGCATTTTGACCCAA-----GAAGCCGCATATGTTGATTAGTGGTTATAC 715762
Query 164201 AACGGTGGTCCTTTCCAACTCGTTGTG---TTC--CACTTCCTGATTGGCAT--CTATGC 164253
|| || ||||||| | | || |||| ||| |||||| | |||| | || |||
Sbjct 715763 AATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTTAMTTGGTGTAGCT-TGC 715821
Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313
| |||||| |||||||||||||||| || |||||| ||||||| |||||||||| ||
Sbjct 715822 T-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCATCCTTGGATTGCTGT 715880
Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373
||||| || |||||||| || || || | ||| || || || |||| | | | |||||
Sbjct 715881 TGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTGATCTACCTTATTGGTCA 715940
Query 164374 AGG 164376
|||
Sbjct 715941 AGG 715943
>seq19
Length=3929835
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 164814 GTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGC 164873
|||| | ||||| ||||| || || ||||||||||| || || |||||||| ||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 164874 ACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 164911
| || |||||||||||||||||| |||| ||| | |||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557654260586400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |