Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq7 143 6e-29
seq2 143 6e-29
seq8 134 3e-26
seq16 114 3e-20
seq3 105 2e-17
>seq7
Length=7914316
Score = 143 bits (158), Expect = 6e-29
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || || || || || ||||| || ||||| ||||| ||||| | ||||||||| ||
Sbjct 4181315 GAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTC 4181256
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || |||||||||||||| |||| ||||||||||| || ||| || |||| ||
Sbjct 4181255 CTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTC 4181196
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || ||| | || | |||| ||| |||||| || || || || ||
Sbjct 4181195 CTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGT 4181136
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || ||||||||||||| ||||||
Sbjct 4181135 CTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 4181103
>seq2
Length=11374105
Score = 143 bits (158), Expect = 6e-29
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || || || || || ||||| || ||||| ||||| ||||| | ||||||||| ||
Sbjct 483653 GAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTC 483712
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || |||||||||||||| |||| ||||||||||| || ||| || |||| ||
Sbjct 483713 CTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTC 483772
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || ||| | || | |||| ||| |||||| || || || || ||
Sbjct 483773 CTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGT 483832
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || ||||||||||||| ||||||
Sbjct 483833 CTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 483865
>seq8
Length=7641483
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || || || || || ||||| || ||||||||||| || |||| ||||
Sbjct 6351901 GAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCG 6351960
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || |||||||||||||| |||| ||||||||||| | || |||||
Sbjct 6351961 GCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTC 6352020
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | |||| ||| ||| || || || ||
Sbjct 6352021 CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGT 6352080
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||||||||| | ||||||
Sbjct 6352081 GATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119
>seq16
Length=4450370
Score = 114 bits (126), Expect = 3e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||||| || || || || ||||| || |||||||| || ||||| | ||
Sbjct 3338525 CCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGT 3338466
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| || || || || |||||||||||||| || | ||||||||||| | ||| ||
Sbjct 3338465 GCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCC 3338406
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||||| || || || || || || | || | | |||| || ||| || || |
Sbjct 3338405 CTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAR 3338346
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || |||||||| ||||||| ||||||
Sbjct 3338345 CGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304
>seq3
Length=8976907
Score = 105 bits (116), Expect = 2e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| ||||||||||| |||||||||||||||| | ||| || ||||| || || || ||
Sbjct 8500485 TTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 8500544
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
||||| | || | | | || || ||| || ||||| || ||||| || || |||
Sbjct 8500545 GCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATAGTCTTCCCGGTG 8500604
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
|||||||||||||||| ||||||
Sbjct 8500605 AGAGTCTTCACGAAGATCTGCAT 8500627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820504333420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |