Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq8 131 2e-25
seq2 116 4e-21
seq3 105 8e-18
seq6 96.9 4e-15
seq19 95.1 1e-14
>seq8
Length=7641483
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 178394 GTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 178453
|||| ||||| | |||| | ||| |||| || ||||| |||||||| |||| |||| | |
Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124
Query 178454 TCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCA 178513
| ||||| ||||| | || | || | | || | || | ||| | || | |||
Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184
Query 178514 ACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTG 178573
||| |||| ||||||||||||||| ||||| || ||||||||| ||||||||||||| |
Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244
Query 178574 ACCTCGCTGCTGCTGAA 178590
|| | ||||| | ||||
Sbjct 525245 ACTTAGCTGCAGTTGAA 525261
>seq2
Length=11374105
Score = 116 bits (128), Expect = 4e-21
Identities = 127/169 (75%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984
||||||||||||||||||||||| || ||| | ||||||||||| ||||| |||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044
||||| || ||||| || || || || ||||||| ||| | | || ||| | ||||||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACT 178093
|| ||| ||||| | |||||| || || || ||| || |||||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq3
Length=8976907
Score = 105 bits (116), Expect = 8e-18
Identities = 154/213 (72%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 177841 GAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTC---GTTATC 177897
||||| || | | | ||| ||||| | |||||||| ||||||| | | || ||| |
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 177898 TTC--CACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAACTTTCTTA 177953
||| |||||| | | ||| | || ||| ||||||| |||||||||||||||| ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850
Query 177954 CCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATC 178013
||| || ||||||| ||| ||||| ||| ||||| || ||||| || || || || |
Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910
Query 178014 TGCTGTATTCCTTGTTTATCCTTTCGGTCAAGG 178046
|||||| || | | || | | | ||||||||
Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq6
Length=8045491
Score = 96.9 bits (106), Expect = 4e-15
Identities = 114/154 (74%), Gaps = 3/154 (2%)
Strand=Plus/Plus
Query 178013 CTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGG 178072
||||||| ||| | | || ||| | |||||||| ||| ||||| | | || | || |
Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622
Query 178073 GTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 178132
| || ||| || ||||||| ||| |||| ||| | |||| |||| |||| ||||
Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679
Query 178133 ACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTT 178166
|||| ||||||||||| ||||| |||||||| ||
Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATT 2591713
>seq19
Length=3929835
Score = 95.1 bits (104), Expect = 1e-14
Identities = 75/90 (83%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 178492 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGT 178551
||||| ||||| || || ||||||||||| |||||||||||||| ||||| || |||
Sbjct 3082460 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 3082519
Query 178552 AATGCTCACAACTTCCCTCTTGACCTCGCT 178581
||||||||||||||| |||| ||| | |||
Sbjct 3082520 AATGCTCACAACTTCTCTCTAGACTTAGCT 3082549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596307050923200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |