Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq8 131 2e-25 seq2 116 4e-21 seq3 105 8e-18 seq6 96.9 4e-15 seq19 95.1 1e-14 >seq8 Length=7641483 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 178394 GTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 178453 |||| ||||| | |||| | ||| |||| || ||||| |||||||| |||| |||| | | Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124 Query 178454 TCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCA 178513 | ||||| ||||| | || | || | | || | || | ||| | || | ||| Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184 Query 178514 ACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTG 178573 ||| |||| ||||||||||||||| ||||| || ||||||||| ||||||||||||| | Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244 Query 178574 ACCTCGCTGCTGCTGAA 178590 || | ||||| | |||| Sbjct 525245 ACTTAGCTGCAGTTGAA 525261 >seq2 Length=11374105 Score = 116 bits (128), Expect = 4e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 ||||||||||||||||||||||| || ||| | ||||||||||| ||||| ||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 ||||| || ||||| || || || || ||||||| ||| | | || ||| | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACT 178093 || ||| ||||| | |||||| || || || ||| || ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 105 bits (116), Expect = 8e-18 Identities = 154/213 (72%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 177841 GAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTC---GTTATC 177897 ||||| || | | | ||| ||||| | |||||||| ||||||| | | || ||| | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 177898 TTC--CACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAACTTTCTTA 177953 ||| |||||| | | ||| | || ||| ||||||| |||||||||||||||| || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850 Query 177954 CCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATC 178013 ||| || ||||||| ||| ||||| ||| ||||| || ||||| || || || || | Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910 Query 178014 TGCTGTATTCCTTGTTTATCCTTTCGGTCAAGG 178046 |||||| || | | || | | | |||||||| Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq6 Length=8045491 Score = 96.9 bits (106), Expect = 4e-15 Identities = 114/154 (74%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 178013 CTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGG 178072 ||||||| ||| | | || ||| | |||||||| ||| ||||| | | || | || | Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622 Query 178073 GTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 178132 | || ||| || ||||||| ||| |||| ||| | |||| |||| |||| |||| Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679 Query 178133 ACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTT 178166 |||| ||||||||||| ||||| |||||||| || Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATT 2591713 >seq19 Length=3929835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 178492 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGT 178551 ||||| ||||| || || ||||||||||| |||||||||||||| ||||| || ||| Sbjct 3082460 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 3082519 Query 178552 AATGCTCACAACTTCCCTCTTGACCTCGCT 178581 ||||||||||||||| |||| ||| | ||| Sbjct 3082520 AATGCTCACAACTTCTCTCTAGACTTAGCT 3082549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596307050923200