Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_031944.1
Length=185102
Score E
Sequences producing significant alignments: (Bits) Value
seq8 122 1e-22
seq2 120 4e-22
seq3 98.7 1e-15
seq19 91.5 2e-13
>seq8
Length=7641483
Score = 122 bits (134), Expect = 1e-22
Identities = 127/167 (76%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 170177 ACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGT 170236
|| ||||| |||||||| |||| |||| | || ||||| ||||| | || || | ||
Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153
Query 170237 CGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 170296
||||| | || | ||| | || | |||||| |||| |||||| ||||||||||||
Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213
Query 170297 CACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343
|| || ||||||||| ||||||||||||| ||| | ||||| | |||
Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq2
Length=11374105
Score = 120 bits (132), Expect = 4e-22
Identities = 128/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 169679 TACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTT 169738
||||||||||||||||||||| | | ||| |||||||||| |||||||| ||||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 169739 GCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAA 169798
|| || || ||||| || || || || | ||||||||| || ||||||| |||| |||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 169799 GGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACT 169847
|| || ||||| | ||||||||| || || || || || || ||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq3
Length=8976907
Score = 98.7 bits (108), Expect = 1e-15
Identities = 152/213 (71%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 169595 GAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC--- 169651
||||| ||| | | ||| | ||||| ||||| || ||||||| | | || ||||
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 169652 TTC--CACTTCCTCATCGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTA 169707
||| |||||| | | || | || |||| |||||| ||||||||||||| | |
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTT 715850
Query 169708 TCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTC 169767
||||||||||||| |||||||| |||||| || || ||||| || || || || |
Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910
Query 169768 CGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGG 169800
|||||||| || |||||| |||| |||||
Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq19
Length=3929835
Score = 91.5 bits (100), Expect = 2e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 170238 GTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGC 170297
|||| | ||||| ||||| || || ||||||||||| ||||| |||||||| ||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 170298 ACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCT 170335
| || |||||||||||||||||| |||| ||| | |||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592198251950400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |