Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq8 122 1e-22 seq2 120 4e-22 seq3 98.7 1e-15 seq19 91.5 2e-13 >seq8 Length=7641483 Score = 122 bits (134), Expect = 1e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 170177 ACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGT 170236 || ||||| |||||||| |||| |||| | || ||||| ||||| | || || | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 170237 CGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 170296 ||||| | || | ||| | || | |||||| |||| |||||| |||||||||||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 170297 CACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 || || ||||||||| ||||||||||||| ||| | ||||| | ||| Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq2 Length=11374105 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 169679 TACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTT 169738 ||||||||||||||||||||| | | ||| |||||||||| |||||||| |||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 169739 GCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAA 169798 || || || ||||| || || || || | ||||||||| || ||||||| |||| ||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 169799 GGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACT 169847 || || ||||| | ||||||||| || || || || || || |||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 169595 GAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC--- 169651 ||||| ||| | | ||| | ||||| ||||| || ||||||| | | || |||| Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 169652 TTC--CACTTCCTCATCGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTA 169707 ||| |||||| | | || | || |||| |||||| ||||||||||||| | | Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTT 715850 Query 169708 TCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTC 169767 ||||||||||||| |||||||| |||||| || || ||||| || || || || | Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910 Query 169768 CGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGG 169800 |||||||| || |||||| |||| ||||| Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq19 Length=3929835 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 170238 GTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGC 170297 |||| | ||||| ||||| || || ||||||||||| ||||| |||||||| |||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 170298 ACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCT 170335 | || |||||||||||||||||| |||| ||| | ||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592198251950400