Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq16 170 4e-37
seq7 170 4e-37
seq2 170 4e-37
seq8 167 5e-36
seq3 105 1e-17
seq18 87.8 4e-12
seq1 87.8 4e-12
seq12 84.2 5e-11
>seq16
Length=4450370
Score = 170 bits (188), Expect = 4e-37
Identities = 168/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941
|| ||||| ||||| || | |||| || || |||||||| ||||| || || ||||||
Sbjct 3338521 AGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGG 3338462
Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001
|| ||||| || || |||||||| ||||||| ||| || ||||| || || ||||||
Sbjct 3338461 CCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 3338402
Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061
||||| |||||||| || || ||| | ||||| |||||||| | || || || | |||
Sbjct 3338401 TTGTCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTG 3338342
Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||| || || | |||||| ||||| ||||||||
Sbjct 3338341 ATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304
>seq7
Length=7914316
Score = 170 bits (188), Expect = 4e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| |||||||| || || || || | ||| || || ||||| |||||||| ||
Sbjct 4181330 ACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 4181271
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | || ||||| || || |||||||| ||||| | || || ||||| |||
Sbjct 4181270 GAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 4181211
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||| ||| |||||||| || || || | ||||||||||| |||| || ||
Sbjct 4181210 GATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTAC 4181151
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||||||||| ||||||| ||||| ||||| ||||||||
Sbjct 4181150 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 4181103
Score = 122 bits (134), Expect = 2e-22
Identities = 308/463 (67%), Gaps = 9/463 (2%)
Strand=Plus/Minus
Query 229947 TCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGT 230006
|| || || ||||| |||||||| | | ||||| ||||| || | |||||||| ||
Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024
Query 230007 TTCTGCGCCATCTTTTGGCTACGCAACAAGGGCG---TCATGCCCGGGCTCGGTCTGTCG 230063
|||||||||||||| ||||| ||| ||| ||| |||||||||| ||| | ||
Sbjct 1959023 TTCTGCGCCATCTTCTGGCT---CAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCC 1958967
Query 230064 AACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGG-TCTTGTATTC 230122
||||| ||||| | | ||||| || || ||| || | || || | || | || ||
Sbjct 1958966 AACGAGCTCATCTCCCGCGACGAGGGCCTCCACT-GCGACTTCGCCTGCCTCCTCTACTC 1958908
Query 230123 GAAGCTAAATAACAAACTACCTTTCGAAACGGTGAAACAAATCGTCACAGAAGTAGTTGC 230182
|| ||| || || ||| | |||||| | || | || |
Sbjct 1958907 CCTCCTCCGCTCCAAGCTCCCCGACGACCGCCTCCGCGCCATCGTCGCCGACGCCGTCGA 1958848
Query 230183 AAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGA 230242
| || ||| ||| | |||||||| | || ||| || ||||||||||| |
Sbjct 1958847 GATCGAGCGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGC 1958788
Query 230243 TCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGA 230302
||||||| || || ||||| ||||| || || || | || | || || || ||
Sbjct 1958787 CCTCATGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCC 1958728
Query 230303 GAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAA 230362
|| | || || || |||||||||| | ||||||||||| || |||||||| ||
Sbjct 1958727 CAAGATCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAA 1958668
Query 230363 AACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404
|| ||||||||||| ||||| ||| |||| || || ||||||
Sbjct 1958667 GACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCC 1958625
>seq2
Length=11374105
Score = 170 bits (188), Expect = 4e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| |||||||| || || || || | ||| || || ||||| |||||||| ||
Sbjct 483638 ACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 483697
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | || ||||| || || |||||||| ||||| | || || ||||| |||
Sbjct 483698 GAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 483757
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||| ||| |||||||| || || || | ||||||||||| |||| || ||
Sbjct 483758 GATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTAC 483817
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||||||||| ||||||| ||||| ||||| ||||||||
Sbjct 483818 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 483865
>seq8
Length=7641483
Score = 167 bits (184), Expect = 5e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || ||||| || || || || | || || || |||||||||||||| ||
Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || |||||||| ||||||| || || ||||| ||
Sbjct 6351953 AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGT 6352012
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || |||||||| |||||||| || || ||| | ||||| ||||| |||| || ||
Sbjct 6352013 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACC 6352072
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||||||||| ||||| | ||||| ||||||||||||||
Sbjct 6352073 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119
>seq3
Length=8976907
Score = 105 bits (116), Expect = 1e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001
|| ||||| || || || ||||| ||||||| | || ||||| || || ||||||
Sbjct 8500470 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCC 8500529
Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061
||||| |||||||| || || ||| | ||||| || || || | || || || || |||
Sbjct 8500530 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589
Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||| || || | |||||| ||||| ||||||||
Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627
Score = 86.0 bits (94), Expect = 1e-11
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| ||||| || ||||| || | ||| || |||||||||||||| || ||
Sbjct 8499991 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCCGCC 8500050
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972
|| |||||||| ||||| || || || ||||| |||||||
Sbjct 8500051 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCA 8500090
>seq18
Length=4131207
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || |||||||||||||| ||||| |||||||| ||||| || || ||||| |||||
Sbjct 771125 TCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAAT 771184
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009
||||| | || ||||| || || ||||||||||| ||
Sbjct 771185 ATCAATCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTG 771225
>seq1
Length=14772968
Score = 87.8 bits (96), Expect = 4e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969
|||| ||||||||||| || ||||| |||||||||||||| || |||||||| || ||||
Sbjct 5905121 CTTTCTGGATGTTGTAATCGGCAAGGGTGCGGCCATCCTCGAGCTGTTTCCCAGCGAAGA 5905180
Query 282970 TCAAACGTTGTTGGTC 282985
||| ||| || |||||
Sbjct 5905181 TCAGACGCTGCTGGTC 5905196
>seq12
Length=5901629
Score = 84.2 bits (92), Expect = 5e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
||| |||||||| || ||||| || || ||| | ||||| ||||| | || || ||
Sbjct 201080 ACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTACTCTCCACCTC 201139
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
||| ||||||||||| || |||| ||||| ||||| |||||||||
Sbjct 201140 GAGGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATT 201185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738931773080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |