Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq16 170 4e-37 seq7 170 4e-37 seq2 170 4e-37 seq8 167 5e-36 seq3 105 1e-17 seq18 87.8 4e-12 seq1 87.8 4e-12 seq12 84.2 5e-11 >seq16 Length=4450370 Score = 170 bits (188), Expect = 4e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| ||||| || | |||| || || |||||||| ||||| || || |||||| Sbjct 3338521 AGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGG 3338462 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || ||||| || || |||||||| ||||||| ||| || ||||| || || |||||| Sbjct 3338461 CCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 3338402 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | ||||| |||||||| | || || || | ||| Sbjct 3338401 TTGTCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTG 3338342 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || | |||||| ||||| |||||||| Sbjct 3338341 ATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq7 Length=7914316 Score = 170 bits (188), Expect = 4e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || || || || | ||| || || ||||| |||||||| || Sbjct 4181330 ACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 4181271 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | || ||||| || || |||||||| ||||| | || || ||||| ||| Sbjct 4181270 GAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 4181211 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||| ||| |||||||| || || || | ||||||||||| |||| || || Sbjct 4181210 GATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTAC 4181151 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 4181150 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 4181103 Score = 122 bits (134), Expect = 2e-22 Identities = 308/463 (67%), Gaps = 9/463 (2%) Strand=Plus/Minus Query 229947 TCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGT 230006 || || || ||||| |||||||| | | ||||| ||||| || | |||||||| || Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024 Query 230007 TTCTGCGCCATCTTTTGGCTACGCAACAAGGGCG---TCATGCCCGGGCTCGGTCTGTCG 230063 |||||||||||||| ||||| ||| ||| ||| |||||||||| ||| | || Sbjct 1959023 TTCTGCGCCATCTTCTGGCT---CAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCC 1958967 Query 230064 AACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGG-TCTTGTATTC 230122 ||||| ||||| | | ||||| || || ||| || | || || | || | || || Sbjct 1958966 AACGAGCTCATCTCCCGCGACGAGGGCCTCCACT-GCGACTTCGCCTGCCTCCTCTACTC 1958908 Query 230123 GAAGCTAAATAACAAACTACCTTTCGAAACGGTGAAACAAATCGTCACAGAAGTAGTTGC 230182 || ||| || || ||| | |||||| | || | || | Sbjct 1958907 CCTCCTCCGCTCCAAGCTCCCCGACGACCGCCTCCGCGCCATCGTCGCCGACGCCGTCGA 1958848 Query 230183 AAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGA 230242 | || ||| ||| | |||||||| | || ||| || ||||||||||| | Sbjct 1958847 GATCGAGCGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGC 1958788 Query 230243 TCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGA 230302 ||||||| || || ||||| ||||| || || || | || | || || || || Sbjct 1958787 CCTCATGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCC 1958728 Query 230303 GAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAA 230362 || | || || || |||||||||| | ||||||||||| || |||||||| || Sbjct 1958727 CAAGATCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAA 1958668 Query 230363 AACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 || ||||||||||| ||||| ||| |||| || || |||||| Sbjct 1958667 GACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCC 1958625 >seq2 Length=11374105 Score = 170 bits (188), Expect = 4e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || || || || | ||| || || ||||| |||||||| || Sbjct 483638 ACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 483697 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | || ||||| || || |||||||| ||||| | || || ||||| ||| Sbjct 483698 GAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 483757 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||| ||| |||||||| || || || | ||||||||||| |||| || || Sbjct 483758 GATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTAC 483817 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 483818 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 483865 >seq8 Length=7641483 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || || || || | || || || |||||||||||||| || Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || |||||||| ||||||| || || ||||| || Sbjct 6351953 AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGT 6352012 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | ||||| ||||| |||| || || Sbjct 6352013 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACC 6352072 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||| | ||||| |||||||||||||| Sbjct 6352073 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 >seq3 Length=8976907 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || ||||| || || || ||||| ||||||| | || ||||| || || |||||| Sbjct 8500470 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCC 8500529 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | ||||| || || || | || || || || ||| Sbjct 8500530 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || | |||||| ||||| |||||||| Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || ||||| || | ||| || |||||||||||||| || || Sbjct 8499991 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCCGCC 8500050 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972 || |||||||| ||||| || || || ||||| ||||||| Sbjct 8500051 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCA 8500090 >seq18 Length=4131207 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| ||||| |||||||| ||||| || || ||||| ||||| Sbjct 771125 TCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAAT 771184 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 ||||| | || ||||| || || ||||||||||| || Sbjct 771185 ATCAATCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTG 771225 >seq1 Length=14772968 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| ||||||||||| || ||||| |||||||||||||| || |||||||| || |||| Sbjct 5905121 CTTTCTGGATGTTGTAATCGGCAAGGGTGCGGCCATCCTCGAGCTGTTTCCCAGCGAAGA 5905180 Query 282970 TCAAACGTTGTTGGTC 282985 ||| ||| || ||||| Sbjct 5905181 TCAGACGCTGCTGGTC 5905196 >seq12 Length=5901629 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| |||||||| || ||||| || || ||| | ||||| ||||| | || || || Sbjct 201080 ACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTACTCTCCACCTC 201139 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| ||||||||||| || |||| ||||| ||||| ||||||||| Sbjct 201140 GAGGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATT 201185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738931773080