Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq16 165 6e-36 seq8 141 7e-29 seq7 140 2e-28 seq2 140 2e-28 seq18 118 8e-22 seq3 107 1e-18 seq12 86.0 5e-12 >seq16 Length=4450370 Score = 165 bits (182), Expect = 6e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| |||||| |||||| |||||||| || |||||||| ||| |||| ||| Sbjct 3338512 ACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCC 3338453 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||||||||| ||||||| ||||||||| || | || | || ||||| ||| Sbjct 3338452 AGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3338393 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||| | ||| |||||||||| ||| || ||||| Sbjct 3338392 ATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTG 3338333 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||| ||||| Sbjct 3338332 CCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq8 Length=7641483 Score = 141 bits (156), Expect = 7e-29 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| || || || || |||| || Sbjct 6351910 CACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCCTC 6351969 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||||||||| ||||||| |||||||| || | || | |||||||| ||| Sbjct 6351970 GAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTG 6352029 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | |||||||| | || |||||||| | || |||||||| Sbjct 6352030 GATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTT 6352089 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||||||||| || ||||| Sbjct 6352090 CCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 >seq7 Length=7914316 Score = 140 bits (154), Expect = 2e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| ||||| |||||| ||||| ||||| |||||||| | | |||| || Sbjct 4181312 CACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTC 4181253 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||||||||| ||||| | |||||||| || | || | || |||| ||| Sbjct 4181252 GAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTG 4181193 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||| | || || ||||| | ||| |||||||| Sbjct 4181192 GATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTT 4181133 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||||| |||||| Sbjct 4181132 CCCCGTCAGGGTCTTCACGAAGATCTGCATG 4181102 >seq2 Length=11374105 Score = 140 bits (154), Expect = 2e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| ||||| |||||| ||||| ||||| |||||||| | | |||| || Sbjct 483656 CACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTC 483715 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||||||||| ||||| | |||||||| || | || | || |||| ||| Sbjct 483716 GAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTG 483775 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||| | || || ||||| | ||| |||||||| Sbjct 483776 GATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTT 483835 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||||| |||||| Sbjct 483836 CCCCGTCAGGGTCTTCACGAAGATCTGCATG 483866 >seq18 Length=4131207 Score = 118 bits (130), Expect = 8e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 |||| ||||| || || ||||| ||||||||||| || |||||| ||||||||||| | Sbjct 771084 TCATCCCCCCCCTGAGCCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGT 771143 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | || || ||| |||| |||||||||||||| ||||| ||||| | |||||| |||| Sbjct 771144 CTGCAAGAGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTG 771203 Query 44226 AAGGCACACCTTCCTTTTCC 44245 ||| | || ||||| ||| Sbjct 771204 GAGGGATGCCCTCCTTGTCC 771223 >seq3 Length=8976907 Score = 107 bits (118), Expect = 1e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| ||||||||||| ||||| ||||||| | |||||| || | || | || |||| Sbjct 8500471 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCT 8500530 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| |||||| ||| | | | ||||| |||| ||| |||||||| | || | Sbjct 8500531 TGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGA 8500590 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || ||||| |||||||||||||| ||||| Sbjct 8500591 TAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || ||| ||||||||||||||||||||| || || ||| |||| || Sbjct 8500008 CACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCCGCCAGGGTGCGGCCGTCCTC 8500067 Query 44188 CAGCTGCTTCCCGGCAAAGATCA 44210 ||||||||| ||||| ||||||| Sbjct 8500068 CAGCTGCTTGCCGGCGAAGATCA 8500090 >seq12 Length=5901629 Score = 86.0 bits (94), Expect = 5e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| |||||||| |||| |||| || |||||||||||||||||| Sbjct 209698 CCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAAG 209757 Query 44207 ATCAAACGCTGCTGATC 44223 || | ||||||||||| Sbjct 209758 ATGAGGCGCTGCTGATC 209774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990312252340