Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq8 168 2e-36
seq16 149 2e-30
seq7 143 6e-29
seq2 143 6e-29
seq3 136 1e-26
seq1 98.7 2e-15
seq12 96.9 8e-15
seq18 87.8 4e-12
>seq8
Length=7641483
Score = 168 bits (186), Expect = 2e-36
Identities = 161/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || |||||||||||||||||||| || |||
Sbjct 6352116 CAGATATTCGTGAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCYGAC 6352057
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| ||||| || || |||||||||||
Sbjct 6352056 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATACCACCGGACCAGCAG 6351997
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || | || || || || || ||| ||
Sbjct 6351996 CGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCGGACTACAACATC 6351937
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||| || ||
Sbjct 6351936 CAGAAGGAGTCGACCCTGCACCTCGT 6351911
>seq16
Length=4450370
Score = 149 bits (164), Expect = 2e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||||| || || || || ||||| | |||||||| ||| |||
Sbjct 3338307 CAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCTCGGAC 3338366
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||||| |||||||| || || ||||| |||||||||||
Sbjct 3338367 ACCATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 3338426
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || | || || ||||| |||||| ||
Sbjct 3338427 CGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAACATC 3338486
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 3338487 CAGAAGGAGTCCACGCTCCACCTGGT 3338512
>seq7
Length=7914316
Score = 143 bits (158), Expect = 6e-29
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || |||||||| |||||||| || || |||
Sbjct 4181106 CAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCTGAC 4181165
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||| |||||| | || || ||||| |||||||||||
Sbjct 4181166 ACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAGCAG 4181225
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || || ||||| ||||| || || ||
Sbjct 4181226 CGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAATATC 4181285
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 4181286 CAGAAGGAGTCGACGCTCCACCTCGT 4181311
>seq2
Length=11374105
Score = 143 bits (158), Expect = 6e-29
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || |||||||| |||||||| || || |||
Sbjct 483862 CAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCTGAC 483803
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||| |||||| | || || ||||| |||||||||||
Sbjct 483802 ACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAGCAG 483743
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || || ||||| ||||| || || ||
Sbjct 483742 CGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAATATC 483683
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 483682 CAGAAGGAGTCGACGCTCCACCTCGT 483657
>seq3
Length=8976907
Score = 136 bits (150), Expect = 1e-26
Identities = 123/155 (79%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| |||||||| || || || |||||||| |||||||| ||| ||
Sbjct 8500624 CAGATCTTCGTGAAGACTCTCACCGGGAAGACTATCACCCTTGAGGTGGAGTCCTCCGAT 8500565
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 8500564 ACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 8500505
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
| || ||||||||||| || ||||| || || ||
Sbjct 8500504 AGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGG 8500470
>seq1
Length=14772968
Score = 98.7 bits (108), Expect = 2e-15
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081
||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||| |
Sbjct 5905209 AGGAATCCCGCCGGACCAGCAGCGTCTGATCTTCGCTGGGAAACAGCTCGAGGATGGCCG 5905150
Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAG 178110
|| ||||||||||| ||| |||| ||||
Sbjct 5905149 CACCCTTGCCGATTACAACATCCAGAAAG 5905121
>seq12
Length=5901629
Score = 96.9 bits (106), Expect = 8e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || |||||||||||||||||||| || |||
Sbjct 201181 CAGATCTTCGTGAAGACGCTGACCGGGAAGACGATCACCCTCGAGGTGGAGAGTAGCGAC 201122
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||| |||||||| |||||||||||||| |||||
Sbjct 201121 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGG 201081
>seq18
Length=4131207
Score = 87.8 bits (96), Expect = 4e-12
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| ||||| || || ||||||||||| |||||||| ||| |||
Sbjct 775006 CAGATTTTCGTGAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGAGCAGCGAC 774947
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGG 178014
||||| || || ||||| ||||||||||
Sbjct 774946 ACCATAGACAATGTCAAGGCCAAGATTCAGG 774916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730891543880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |