Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8 168 2e-36 seq16 149 2e-30 seq7 143 6e-29 seq2 143 6e-29 seq3 136 1e-26 seq1 98.7 2e-15 seq12 96.9 8e-15 seq18 87.8 4e-12 >seq8 Length=7641483 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || |||||||||||||||||||| || ||| Sbjct 6352116 CAGATATTCGTGAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCYGAC 6352057 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| || || ||||||||||| Sbjct 6352056 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATACCACCGGACCAGCAG 6351997 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || || || || ||| || Sbjct 6351996 CGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCGGACTACAACATC 6351937 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 6351936 CAGAAGGAGTCGACCCTGCACCTCGT 6351911 >seq16 Length=4450370 Score = 149 bits (164), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || ||||| | |||||||| ||| ||| Sbjct 3338307 CAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCTCGGAC 3338366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| || || ||||| ||||||||||| Sbjct 3338367 ACCATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 3338426 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||||| |||||| || Sbjct 3338427 CGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAACATC 3338486 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 3338487 CAGAAGGAGTCCACGCTCCACCTGGT 3338512 >seq7 Length=7914316 Score = 143 bits (158), Expect = 6e-29 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| |||||||| || || ||| Sbjct 4181106 CAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCTGAC 4181165 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| |||||| | || || ||||| ||||||||||| Sbjct 4181166 ACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAGCAG 4181225 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 4181226 CGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAATATC 4181285 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 4181286 CAGAAGGAGTCGACGCTCCACCTCGT 4181311 >seq2 Length=11374105 Score = 143 bits (158), Expect = 6e-29 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| |||||||| || || ||| Sbjct 483862 CAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCTGAC 483803 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| |||||| | || || ||||| ||||||||||| Sbjct 483802 ACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAGCAG 483743 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 483742 CGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAATATC 483683 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 483682 CAGAAGGAGTCGACGCTCCACCTCGT 483657 >seq3 Length=8976907 Score = 136 bits (150), Expect = 1e-26 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| |||||||| || || || |||||||| |||||||| ||| || Sbjct 8500624 CAGATCTTCGTGAAGACTCTCACCGGGAAGACTATCACCCTTGAGGTGGAGTCCTCCGAT 8500565 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 8500564 ACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 8500505 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | || ||||||||||| || ||||| || || || Sbjct 8500504 AGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGG 8500470 >seq1 Length=14772968 Score = 98.7 bits (108), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||| | Sbjct 5905209 AGGAATCCCGCCGGACCAGCAGCGTCTGATCTTCGCTGGGAAACAGCTCGAGGATGGCCG 5905150 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAG 178110 || ||||||||||| ||| |||| |||| Sbjct 5905149 CACCCTTGCCGATTACAACATCCAGAAAG 5905121 >seq12 Length=5901629 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||||||||||||||| || ||| Sbjct 201181 CAGATCTTCGTGAAGACGCTGACCGGGAAGACGATCACCCTCGAGGTGGAGAGTAGCGAC 201122 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| |||||||||||||| ||||| Sbjct 201121 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGG 201081 >seq18 Length=4131207 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || ||||||||||| |||||||| ||| ||| Sbjct 775006 CAGATTTTCGTGAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGAGCAGCGAC 774947 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGG 178014 ||||| || || ||||| |||||||||| Sbjct 774946 ACCATAGACAATGTCAAGGCCAAGATTCAGG 774916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730891543880