Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq16 172 5e-38
seq7 150 2e-31
seq2 150 2e-31
seq8 140 3e-28
seq3 98.7 9e-16
seq12 91.5 1e-13
>seq16
Length=4450370
Score = 172 bits (190), Expect = 5e-38
Identities = 176/227 (78%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| || |||||| ||||||||| ||||||||||||| |||||||||
Sbjct 3338521 AGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGG 3338462
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || |||||||| |||||||| ||||| ||||| ||||||| ||| | || ||||
Sbjct 3338461 CCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 3338402
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| ||| || |||| ||| | | | ||||| ||||||||||||| |||
Sbjct 3338401 TTGTCCTGGATCTTAGCCTTC-ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGT 3338343
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGA 41870
|| || || || || || ||||| ||||| |||||||| | || ||
Sbjct 3338342 GATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATCTGATGGA 3338296
>seq7
Length=7914316
Score = 150 bits (166), Expect = 2e-31
Identities = 174/230 (76%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||| || || ||||| ||||||||| || || ||||||| |
Sbjct 4181329 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 4181270
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
|| || | | |||| ||||||||||| |||||||| || || ||||| |||||| |||||
Sbjct 4181269 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 4181210
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | | ||||| |||| ||| || |||| || | | | |||||| ||||| |
Sbjct 4181209 ATC-CCCTCCTYGTCCTGGATCTTGGCCTTC-ACATTGTCGATAGTGTCAGAAGACTCTA 4181152
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | ||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct 4181151 CCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATG 4181102
>seq2
Length=11374105
Score = 150 bits (166), Expect = 2e-31
Identities = 174/230 (76%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||| || || ||||| ||||||||| || || ||||||| |
Sbjct 483639 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 483698
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
|| || | | |||| ||||||||||| |||||||| || || ||||| |||||| |||||
Sbjct 483699 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 483758
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | | ||||| |||| ||| || |||| || | | | |||||| ||||| |
Sbjct 483759 ATC-CCCTCCTYGTCCTGGATCTTGGCCTTC-ACATTGTCGATAGTGTCAGAAGACTCTA 483816
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | ||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct 483817 CCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATG 483866
>seq8
Length=7641483
Score = 140 bits (154), Expect = 3e-28
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||| || ||||| || ||||||||| ||||| ||||| |
Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||||||||| |||||||| ||||| ||||| ||||||| ||
Sbjct 6351953 AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGT 6352012
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| || | || || | ||| | | | ||||| ||||||||
Sbjct 6352013 ATCCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCAC 6352071
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 6352072 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119
>seq3
Length=8976907
Score = 98.7 bits (108), Expect = 9e-16
Identities = 118/158 (75%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 41706 CGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCT 41765
|||| || ||||||||||||||||| ||||| | ||| ||||||| ||| | || |||||
Sbjct 8500471 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCT 8500530
Query 41766 TGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| || | || || | ||| | | | || ||| ||||||||||| | ||
Sbjct 8500531 TGTCC-TGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || || ||||| ||||| ||||||||
Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627
>seq12
Length=5901629
Score = 91.5 bits (100), Expect = 1e-13
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||| ||||| ||||||| |||||||||| |||| ||||||||||| ||||| || ||
Sbjct 209701 TTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAAGATG 209760
Query 41735 AGGCGCTGTTGGTCC-GCGGGA 41755
|||||||| || ||| ||||||
Sbjct 209761 AGGCGCTGCTGATCCGGCGGGA 209782
Score = 86.0 bits (94), Expect = 6e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||| || || ||||| | ||||| ||| |||| ||||| ||||||||||||||||||
Sbjct 200825 TTCTGGATATTGTAGTCCGCAAGGGTACGCCCGTCCTCGAGTTGCTTGCCGGCGAATATC 200884
Query 41735 AGGCGCTGTTGGTCCGCGGGAA 41756
|| ||||| ||||| | |||||
Sbjct 200885 AGACGCTGCTGGTCGGGGGGAA 200906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303884424000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |