Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq16 172 5e-38 seq7 150 2e-31 seq2 150 2e-31 seq8 140 3e-28 seq3 98.7 9e-16 seq12 91.5 1e-13 >seq16 Length=4450370 Score = 172 bits (190), Expect = 5e-38 Identities = 176/227 (78%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || |||||| ||||||||| ||||||||||||| ||||||||| Sbjct 3338521 AGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGG 3338462 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| |||||||| ||||| ||||| ||||||| ||| | || |||| Sbjct 3338461 CCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 3338402 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| || |||| ||| | | | ||||| ||||||||||||| ||| Sbjct 3338401 TTGTCCTGGATCTTAGCCTTC-ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGT 3338343 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGA 41870 || || || || || || ||||| ||||| |||||||| | || || Sbjct 3338342 GATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATCTGATGGA 3338296 >seq7 Length=7914316 Score = 150 bits (166), Expect = 2e-31 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || ||||| ||||||||| || || ||||||| | Sbjct 4181329 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 4181270 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || || | | |||| ||||||||||| |||||||| || || ||||| |||||| ||||| Sbjct 4181269 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 4181210 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | | ||||| |||| ||| || |||| || | | | |||||| ||||| | Sbjct 4181209 ATC-CCCTCCTYGTCCTGGATCTTGGCCTTC-ACATTGTCGATAGTGTCAGAAGACTCTA 4181152 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 4181151 CCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATG 4181102 >seq2 Length=11374105 Score = 150 bits (166), Expect = 2e-31 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || ||||| ||||||||| || || ||||||| | Sbjct 483639 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 483698 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || || | | |||| ||||||||||| |||||||| || || ||||| |||||| ||||| Sbjct 483699 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 483758 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | | ||||| |||| ||| || |||| || | | | |||||| ||||| | Sbjct 483759 ATC-CCCTCCTYGTCCTGGATCTTGGCCTTC-ACATTGTCGATAGTGTCAGAAGACTCTA 483816 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 483817 CCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATG 483866 >seq8 Length=7641483 Score = 140 bits (154), Expect = 3e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || ||||| || ||||||||| ||||| ||||| | Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| |||||||| ||||| ||||| ||||||| || Sbjct 6351953 AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGT 6352012 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || | || || | ||| | | | ||||| |||||||| Sbjct 6352013 ATCCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCAC 6352071 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 6352072 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 >seq3 Length=8976907 Score = 98.7 bits (108), Expect = 9e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 41706 CGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCT 41765 |||| || ||||||||||||||||| ||||| | ||| ||||||| ||| | || ||||| Sbjct 8500471 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCT 8500530 Query 41766 TGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| || | || || | ||| | | | || ||| ||||||||||| | || Sbjct 8500531 TGTCC-TGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| ||||| |||||||| Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 >seq12 Length=5901629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||||| |||||||||| |||| ||||||||||| ||||| || || Sbjct 209701 TTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAAGATG 209760 Query 41735 AGGCGCTGTTGGTCC-GCGGGA 41755 |||||||| || ||| |||||| Sbjct 209761 AGGCGCTGCTGATCCGGCGGGA 209782 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| || || ||||| | ||||| ||| |||| ||||| |||||||||||||||||| Sbjct 200825 TTCTGGATATTGTAGTCCGCAAGGGTACGCCCGTCCTCGAGTTGCTTGCCGGCGAATATC 200884 Query 41735 AGGCGCTGTTGGTCCGCGGGAA 41756 || ||||| ||||| | ||||| Sbjct 200885 AGACGCTGCTGGTCGGGGGGAA 200906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303884424000