Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq220121 116 6e-21 SEQ37921 107 3e-18 seq232474 104 4e-17 SEQ77465 93.3 6e-14 seq190873 86.0 9e-12 seq157437 86.0 9e-12 >seq220121 Length=379296 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||||||||| || || || || ||| | || | || ||| Sbjct 16996 ATGCAGATATTTGTCAAGACACTAACTGGAAAGACCATCACTCTTGAAGTGGAGAGC-TC 17054 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || || || ||||| |||||||| || ||||| || Sbjct 17055 CGACACCATTGATAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCTGACCA 17114 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || | |||||| | || ||||| | ||||| || Sbjct 17115 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGTACATTGGCGGATTACAA 17174 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || ||| | || |||||| | || |||| ||||| || Sbjct 17175 TATCCAGAAGGAGTCTACTCTTCACTTGGTTCTCCGCCTACGTGGTGGCAT 17225 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| |||| || || || || ||| | ||| | || ||| Sbjct 17224 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 17283 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || || || || || || || || || || |||||||| Sbjct 17284 -GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCA 17342 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| || || | |||||| | || || || | ||||||||| Sbjct 17343 GCAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAA 17402 Query 124718 TATTCAAAAAGAATCAACTTTGCAT 124742 || ||||||||||| ||| | ||| Sbjct 17403 CATCCAAAAAGAATCCACTCTTCAT 17427 >SEQ37921 Length=51049 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 || || || ||| | |||||| |||| || || || || ||| | ||| | || ||| Sbjct 46642 ATACAGATTTTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTC- 46584 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | || || || || || || || || || || || ||||| Sbjct 46583 TGACACCATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCA 46524 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| || ||| | |||||| | || || || | ||||||||| Sbjct 46523 GCAGAGGCTTATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAA 46464 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||||| ||| | ||| | || | || | || ||||| Sbjct 46463 CATCCAAAAAGAATCCACTCTTCATCTTGTCCTGCGCCTCCGTGGTGG 46416 Score = 104 bits (114), Expect = 4e-17 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||||||||| || || || || ||| | || |||| ||| Sbjct 47097 ATGCAGATATTTGTCAAGACACTAACCGGAAAGACCATCACTCTTGACGTTGAGAGC-TC 47039 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || || || |||||||||||||| || ||||| || Sbjct 47038 CGACACCATTGATAATGTGAAGGCTAAGATCCAGGATAAAGAAGGTATCCCGCCTGA-CA 46980 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || | |||||| || || || | |||||| || Sbjct 46979 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGAGCGCACTTTGGCAGATTACAA 46920 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || || || || | || |||| | || | || ||||| || Sbjct 46919 TATTCAGAAGGAGTCTACCCTTCACCTGGTCCTCCGCCTCCGTGGTGGGAT 46869 >seq232474 Length=955513 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || ||||| || || || | ||| |||| | Sbjct 317954 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 317895 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | ||| ||| || || || ||||| || || || || || || Sbjct 317894 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 317835 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| || | || ||||| || || ||| | |||||| | || || | | ||||| || Sbjct 317834 CAACGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTTGCTGATTACAAC 317775 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | || |||||| | ||| | || ||||| || Sbjct 317774 ATCCAAAAAGAATCCACTCTCCACTTGGTTCTCCGTCTCCGTGGTGGCAT 317725 >SEQ77465 Length=311257 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || ||||| || ||||| || ||||||||||| |||||||| ||||| || | Sbjct 162289 CAGGACAAGGAAGGCATCCCACCAGACCAACAAAGGCTGATTTTTGCTGGAAAGCAGCTG 162348 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||| | || ||||||| ||||| || ||||| ||||| || || | |||||||| Sbjct 162349 GAAGATGGACGGACATTAGCTGATTACAACATTCAGAAAGAGTCGACACTTCATTTGGT 162407 >seq190873 Length=246963 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || || || || || || ||||| || |||||||| |||||||| || Sbjct 127261 AAGATGCAGGACAAGGAGGGAATTCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAG 127320 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | || || || | ||||||||| || ||||||||||| ||| | ||| Sbjct 127321 CAGCTGGAGGATGGGCGTACCTTGGCAGATTATAACATCCAAAAAGAATCCACTCTTCAT 127380 >seq157437 Length=279161 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 || || || || ||||| || || || || || |||||| | |||||||| ||||| || Sbjct 135561 ATGCAGGACAAGGAAGGCATCCCGCCAGACCAGCAAAGGTTAATTTTTGCTGGAAAGCAG 135620 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 | || ||| | || ||||||| || || || ||||||||||| ||||| | |||||| Sbjct 135621 CTGGAAGATGGACGGACATTAGCTGACTACAACATTCAAAAAGAGTCAACACTTCATTTG 135680 Query 124746 GT 124747 || Sbjct 135681 GT 135682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752817201635200