Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq234232 96.9 3e-15 seq215674 96.9 3e-15 seq109773 91.5 1e-13 >seq234232 Length=92786 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || | ||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 54739 CAGTTTTATGTCGAGAATGGAGAATTATCCTGTCAGATGTATCAACGTTCAGCTGACATG 54798 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || ||||| |||||| ||| | || || |||| |||||||||||| Sbjct 54799 GGGCTTGGTGTACCATTCAACATTGCATCATATTCTCTTCTGACGTGTATGATTGCACAA 54858 Query 20551 GTT 20553 ||| Sbjct 54859 GTT 54861 >seq215674 Length=680519 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || | ||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 28416 CAGTTTTATGTCGAGAATGGAGAATTATCCTGTCAGATGTATCAACGTTCAGCTGACATG 28475 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || ||||| |||||| ||| | || || |||| |||||||||||| Sbjct 28476 GGGCTTGGTGTACCATTCAACATTGCATCATATTCTCTTCTGACGTGTATGATTGCACAA 28535 Query 20551 GTT 20553 ||| Sbjct 28536 GTT 28538 >seq109773 Length=384376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || | ||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 321468 CAGTTTTATGTCGAGAATGGAGAATTATCCTGTCAGATGTATCAACGTTCAGCTGACATG 321409 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || ||||| |||||| ||| | || || |||| |||| ||||||| Sbjct 321408 GGGCTTGGTGTACCATTCAACATTGCATCATATTCTCTTCTGACGTGTATGCTTGCACAA 321349 Query 20551 GTT 20553 ||| Sbjct 321348 GTT 321346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397824513895855