Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq253083 107 4e-18 seq219044 105 1e-17 seq150964 102 2e-16 seq229913 100 6e-16 seq166636 100 6e-16 SEQ44094 96.9 7e-15 >seq253083 Length=222612 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 124654 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 124595 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||||| ||| | | | |||||| | ||| | Sbjct 124594 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCG 124535 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| ||||| |||| |||||||| ||||| | || | || |||| ||||||| Sbjct 124534 GTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 124475 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 124474 GGGCAGCGC 124466 >seq219044 Length=377041 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||||||||| ||| || ||||| |||| || ||||| || ||| | Sbjct 256006 AGACTTTGACTACGATTTCTTTGGTTTTAAGACGCTTGAGAGGTCTTATCTACTGAAAGT 256065 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| || Sbjct 256066 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 256125 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||| || ||| | || | || ||| | ||| | | |||||| | || Sbjct 256126 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 256185 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || || ||||| || || || Sbjct 256186 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 256218 >seq150964 Length=68769 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 24788 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 24847 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||||| ||| | | | |||||| | ||| | Sbjct 24848 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCG 24907 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||| Sbjct 24908 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 24967 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 24968 GGGGAGCGC 24976 >seq229913 Length=128461 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||||||||| ||| || || || |||| || ||||| || ||| | Sbjct 127843 AGACTTTGACTACGATTTCTTTGGTTTTAAGACACTTGAGAGGTCTTATCTACTGAAAGT 127902 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| || Sbjct 127903 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 127962 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||| || ||| | || | || ||| | ||| | | |||||| | || Sbjct 127963 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 128022 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || || ||||| || || || Sbjct 128023 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 128055 >seq166636 Length=45847 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||||||||| ||| || ||||| |||| || ||| | || ||| | Sbjct 33749 AGACTTCGACTACGATTTCTTTGGTTTTAAGACGCTTGAGAGGTCTTATTTACTGAAAGT 33808 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| || Sbjct 33809 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 33868 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||| || ||| | || | || ||| | ||| | | |||||| | || Sbjct 33869 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 33928 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || || ||||| || || || Sbjct 33929 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 33961 >SEQ44094 Length=747601 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||||||||| ||| || ||||| |||| || ||||| || ||| | Sbjct 390318 AGACTTTGACTACGATTTCTTTGGTTTTAAGACGCTTGAGAGGTCTTATCTACTGAAAGT 390259 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | || ||| || || || ||||| ||| | || |||| ||||| || Sbjct 390258 TGGTGGGAAGGTTGTCGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 390199 Query 248928 CAAGGATGACATAGAG 248943 ||||||||| || ||| Sbjct 390198 CAAGGATGATATTGAG 390183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069921981071552