Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq185425 89.7 4e-13 >seq185425 Length=149815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 |||||||| || | || || | ||| || || || || || || ||||||||||| || Sbjct 40939 CCTCCCCGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 40880 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | || |||| || ||||| || |||| || | || || ||| ||| Sbjct 40879 AGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 40820 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || |||| | |||||| | ||| |||||| | ||| Sbjct 40819 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGACGACTCCACC 40760 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| |||||||| || ||||| || ||||| Sbjct 40759 TCAAGGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAGATCTGCAT 40713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378052082246055