Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq253083 86.0 8e-12 seq150964 82.4 1e-10 >seq253083 Length=222612 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||||||||| |||||||| | || | ||||| || || ||||| Sbjct 124368 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 124309 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| ||| || ||||| |||||| Sbjct 124308 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAG 124249 Query 33702 ATTCCTTCTACTGCA-GCAAAGGC 33724 || || || || ||| || ||||| Sbjct 124248 ATGCCCTCGAC-GCAGGCGAAGGC 124226 >seq150964 Length=68769 Score = 82.4 bits (90), Expect = 1e-10 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||||||||| |||||||| | || | ||||| || || ||||| Sbjct 25074 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 25133 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| ||| || || || |||||| Sbjct 25134 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 25193 Query 33702 ATTCCTTCTACTGCA-GCAAAGGC 33724 || || || || ||| || ||||| Sbjct 25194 ATGCCCTCGAC-GCAGGCGAAGGC 25216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627617654995920