Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq217728 107 3e-18 seq105865 104 3e-17 seq253083 96.9 5e-15 seq150964 96.9 5e-15 seq105618 95.1 2e-14 >seq217728 Length=151490 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 39199 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 39140 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || |||||||| ||| | ||||||||||| || || Sbjct 39139 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAATAGCACGAATATTGTGAACAGA 39080 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || |||| || | || ||| || | ||||||||||| Sbjct 39079 AACACCAATTCCTCCAGCAGATTTACTTATGACAGCACATTCCTTCAGAGTATCATAGAT 39020 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| | || |||||||| Sbjct 39019 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 38978 >seq105865 Length=238993 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| |||||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 96362 TCCACCCTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 96303 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || ||||| || ||| | |||||||| || || ||| Sbjct 96302 ATTGGATGTCCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGAACTGA 96243 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || ||| || | ||||||||||| Sbjct 96242 GACACCAATCCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGAT 96183 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | || |||||||| Sbjct 96182 TCCCTCAATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 96141 >seq253083 Length=222612 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 124368 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 124309 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 124308 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGAGAAGAA 124250 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| || || || ||| ||||| || Sbjct 124249 GATGCCCTCGACGCAGGCGAAGGCGAC 124223 >seq150964 Length=68769 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 25074 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 25133 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 25134 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 25192 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| || || || ||| ||||| || Sbjct 25193 GATGCCCTCGACGCAGGCGAAGGCGAC 25219 >seq105618 Length=129425 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 35595 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATTCC 35536 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || ||| || || ||| | |||||||| || || || Sbjct 35535 ATTGGATGTTCCATTTGTTCCTCGGATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 35476 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || || || || ||| ||| | || ||| || | ||||||||||| Sbjct 35475 GACGCCAATCCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 35416 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | || |||||||| Sbjct 35415 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 35374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715759896059960