Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq232474 96.9 3e-15 seq218049 93.3 3e-14 SEQ37921 86.0 5e-12 SEQ13044 82.4 6e-11 >seq232474 Length=955513 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| |||| |||| || ||||| | |||||||| | Sbjct 317727 GCCACCACGGAGACGGAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGC 317786 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || ||| | || || | ||| ||||||||||| ||||| || || || || | || Sbjct 317787 AAGAGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCTGGGGG 317846 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| | ||||||| | | | |||||| || ||| || Sbjct 317847 GATGCCCTCTTTGTCCTGGATCTTCGCTTTGACATTATCGATCGTGTCGGAAGACTCAAC 317906 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || || |||||||| |||||||| Sbjct 317907 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 317954 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| |||| ||| ||| || || | |||||||| | Sbjct 353664 CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCT 353723 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || || | ||| ||||| ||||| || | |||||| || || | ||| Sbjct 353724 AGTGTCCGCCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGCGGG 353783 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| || ||| |||||| | |||||| Sbjct 353784 ATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCGACC 353843 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATT 43119 || | || || || || ||||| || || ||||||||||| ||||| | | ||||| Sbjct 353844 TCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAAATCTGCATCTGCATAATT 353900 >seq218049 Length=338111 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| ||| || || | |||||||| | || || || | || || Sbjct 175199 ACCAAGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCAAAAGTGTGTCCATCCTCA 175140 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||| ||||||||||| ||||| ||||| || || | || | || || || || | Sbjct 175139 AGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 175080 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||||| || ||| || ||| || ||| || || | || || || || Sbjct 175079 ATCTTCGCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTTG 175020 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || |||||||| |||||||| Sbjct 175019 CCGGTGAGGGTCTTCACAAAGATTTGCAT 174991 >SEQ37921 Length=51049 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| | ||||||||| | || || | || ||||| || || Sbjct 47134 CTCCTTCTGAATGTTGTAATCAGCCAATGTACGCCCATCCTCAAGCTGCTTGCCAGCGAA 47193 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | | ||||||||| | || | ||| || || || |||| | ||||| | Sbjct 47194 GATGAGCCTCTGTTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATT 47253 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| | ||| || |||| ||||| || || ||||| ||||||||||| Sbjct 47254 GTCGATGGTGTCCGAACTCTCAACTTCTAGAGTTATGGTCTTCCCGGTAAGAGTTTTCAC 47313 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 47314 AAAGATCTGCAT 47325 >SEQ13044 Length=324569 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||||||||| ||| |||||| || | |||||||| | Sbjct 290320 GCCACCACGTAGGCGGAGCACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGC 290379 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || || | || ||||| ||||| ||||| | ||| || || | || Sbjct 290380 CAGAGTGCGACCATCCTCAAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGAGG 290439 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | | || || || | | ||| || || |||||| Sbjct 290440 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATTGTATCCGAAGACTCGAC 290499 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || || |||||||| || || ||||| Sbjct 290500 CTCTAGAGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 290547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380070783735462