Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq217728 104 3e-17 seq105865 98.7 1e-15 seq105618 89.7 7e-13 >seq217728 Length=151490 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 39199 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 39140 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| ||||| || || |||||||| ||| | |||||||||||| || || Sbjct 39139 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAATAGCACGAATATTGTGAACAGA 39080 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || |||| || | || ||| || | ||||||||||| Sbjct 39079 AACACCAATTCCTCCAGCAGATTTACTTATGACAGCACATTCCTTCAGAGTATCATAGAT 39020 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| | || |||||||| Sbjct 39019 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 38978 >seq105865 Length=238993 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| |||||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 96362 TCCACCCTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 96303 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| ||||| || || ||||| || ||| | |||||||| ||| || ||| Sbjct 96302 ATTGGATGTCCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGAACTGA 96243 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || ||| || | || ||| || | ||||||||||| Sbjct 96242 GACACCAATCCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGAT 96183 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || |||||||| ||||| | || |||||||| Sbjct 96182 TCCCTCAATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 96141 >seq105618 Length=129425 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 35595 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATTCC 35536 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| ||||| || || ||| || || ||| | |||||||| ||| || || Sbjct 35535 ATTGGATGTTCCATTTGTTCCTCGGATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 35476 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | || || || || || ||| ||| | || ||| || | ||||||||||| Sbjct 35475 GACGCCAATCCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 35416 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || |||||||| ||||| | || |||||||| Sbjct 35415 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 35374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668794919163640