Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq150964 161 1e-34 seq253083 156 6e-33 >seq150964 Length=68769 Score = 161 bits (178), Expect = 1e-34 Identities = 579/892 (65%), Gaps = 40/892 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | || ||||| | ||||| ||||| |||||||| Sbjct 25653 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCT 25594 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | | ||||| || || | Sbjct 25593 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACGCT-- 25536 Query 125112 ACTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 || ||| ||||| | || || || ||| | | |||||||| |||| ||| || | Sbjct 25535 -CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACG 25477 Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| || || | | ||| | || || || | | |||| Sbjct 25476 GCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCC 25418 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| Sbjct 25417 AGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTG 25358 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAAT 125344 || || || | ||||| ||||| | |||| || || ||||| ||| || Sbjct 25357 CTCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCAT 25302 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 |||||| | || | | || ||||| | |||| | | || |||||||| | || Sbjct 25301 CGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGG 25242 Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 || ||||| | || | | || || |||||| ||| |||||||||||||| | Sbjct 25241 GGAGCGCTTCG----CGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCT 25186 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||| | || |||| ||||||| ||||||||||||||||| |||||||| || || || Sbjct 25185 CGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACC 25127 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || Sbjct 25126 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCT- 25068 Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCAACATTGT 125641 | || | || ||| | | | || ||| || ||| || | || || Sbjct 25067 CTACGACATCCTCCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATCGT 25017 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701 |||| |||||| || || ||||| | ||| | || || | | | Sbjct 25016 GTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGT 24957 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 ||||||||| || | || ||| || ||||||| ||||| || || || || || || Sbjct 24956 CGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT--- 24900 Query 125762 CGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818 | | | | ||| |||||| | |||||||||| || || || || | ||| Sbjct 24899 CATGGCGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCT 24840 Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| || || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 24839 CATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 24788 >seq253083 Length=222612 Score = 156 bits (172), Expect = 6e-33 Identities = 579/893 (65%), Gaps = 42/893 (5%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 123789 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 123848 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 | ||||| | ||| ||||| || || ||| ||| | | | ||||| || | Sbjct 123849 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACCCT-- 123906 Query 125113 CTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || ||| ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 123907 CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGG 123966 Query 125171 AATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGT 125229 ||||| || || || | | ||| | || || || | | |||| Sbjct 123967 CATCGTGCTGGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCCA 124025 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| | Sbjct 124026 GGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTGC 124085 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATC 125345 | || || | ||||| ||||| | |||| || || ||||| ||| ||| Sbjct 124086 TCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATC 124141 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 ||||| | || | | || ||||| | |||| | || |||||||| | || Sbjct 124142 GACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGG 124201 Query 125406 AAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TT 125463 || ||||| |||| | | || || |||||| ||| |||||||||||||| | Sbjct 124202 GAGCGCTTCG----CCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTC 124257 Query 125464 CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | || ||| |||||||| ||||||||||||||||| |||||||| || || || Sbjct 124258 CGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCT 124316 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || | Sbjct 124317 TCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCT 124376 Query 125584 TTCGCAACTATCTGCGTCCCGAG-TGCA-GA-TCCAGCGATGAAAAGGTCATCAACATTG 125640 | || ||||| | || || | || ||| || ||| || | || | Sbjct 124377 ---ACGACATCCTGCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATCG 124424 Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700 | |||| |||||| || || ||||| | ||| | || || | | Sbjct 124425 TCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCG 124484 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 | ||||||||| || | || ||| || ||||||| ||||| ||||| || || || || Sbjct 124485 TCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-- 124542 Query 125761 ACGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 | | | | ||| |||||| | |||||||||| || || || || | ||| Sbjct 124543 -CATGGCGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGC 124601 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| || || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 124602 TCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 124654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738470689477640