Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq232474 86.0 5e-12 seq220121 82.4 6e-11 >seq232474 Length=955513 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || ||||| |||||||| ||||||||||| ||| | | | || || Sbjct 317745 AACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGCAAGAGTGCGTCCATCCTC 317804 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | ||||| ||||| ||||| || || || |||||||| Sbjct 317805 AAGTTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCTGGGGGGATGCCCTCTTTGTCCTG 317864 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| | || || || ||| | || || || | ||| ||||| | Sbjct 317865 GATCTTCGCT-TTGACATTATCGATCGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 317923 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || || ||||| |||||||| Sbjct 317924 TGCCGGTGAGGGTCTTCACAAAGATTTGCAT 317954 >seq220121 Length=379296 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||||| | | ||| | || ||||| || || ||||| ||||||||||| || Sbjct 16766 CCACCTCTCAGGCGGAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGC- 16708 Query 15196 TAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253 ||| ||| | || |||| || |||||||| |||| | | |||||||| Sbjct 16707 --CAATGTTCGGCCATCCTCTAGCTGCTTGCCAGCAAATATGAGCCTCTGTTGGTCCGGA 16650 Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 ||||| || || ||||| ||| ||| || ||| | || |||||||| | | || Sbjct 16649 GGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTCG 16590 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || || || || ||||| || || || ||||| || ||||| Sbjct 16589 ACCTCAAGAGTGATAGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 16540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360945739767099