Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq232474 95.1 1e-14 seq218049 95.1 1e-14 seq238630 86.0 5e-12 seq220121 86.0 5e-12 seq164537 86.0 5e-12 seq143053 86.0 5e-12 SEQ17609 82.4 6e-11 >seq232474 Length=955513 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| |||||||| |||| ||| | ||||| Sbjct 353452 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCCAGTGTGCGACCATCCTC 353511 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 353512 AAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 353571 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || || ||| | | ||| ||||| || Sbjct 353572 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCCACCTTCAGGGTGATGGTCTT 353631 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| || ||||| Sbjct 353632 GCCGGTCAAGGTCTTGACAAAGATCTGCAT 353661 >seq218049 Length=338111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||||| || | ||||| Sbjct 175428 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGAGTGCGACCATCCTC 175369 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 175368 GAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 175309 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || || ||| || | ||| ||||| || Sbjct 175308 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCCACCTCCAGGGTGATGGTCTT 175249 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || || |||||||| || ||||| Sbjct 175248 GCTAGTCAAGGTCTTGACAAAGATCTGCAT 175219 >seq238630 Length=26481 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||| | ||| | || ||||||||||| || ||||| ||||| Sbjct 3934 CCACCACGGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGCA 3875 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| ||||| ||| | ||||| | |||||| ||| ||| Sbjct 3874 AGGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATAAGACGCTGCTGGTCCGGGGGG 3815 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||| || || | | ||| || || | ||| Sbjct 3814 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGACC 3755 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || ||||| ||||| ||||| Sbjct 3754 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 3708 >seq220121 Length=379296 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || |||||||| |||| |||| | | ||||| ||||| || || Sbjct 16736 GTAGACTCCTTTTGGATGTTGTAATCAGCCAATGTTCGGCCATCCTCTAGCTGCTTGCCA 16677 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || ||||| || ||| || | |||||| ||||| ||| || ||| Sbjct 16676 GCAAATATGAGCCTCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTA 16617 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | ||| || | || || || || ||||| | || Sbjct 16616 ACATTGTCAATGGTATCTGAACTCTCGACCTCAAGAGTGATAGTCTTGCCTGTGAGGGTC 16557 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 16556 TTGACAAAGATCTGCAT 16540 >seq164537 Length=486414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||||||||||| ||||| ||||||||||||| || | ||||| Sbjct 443145 CACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGACCATCCTC 443086 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || |||||| | || | |||||||| ||| || | |||||| ||||| Sbjct 443085 AAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 443026 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | ||||| || ||| || | ||||||||| || Sbjct 443025 GATCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACCTCTAGGGTAATGGTCTT 442966 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||| || || || ||||| Sbjct 442965 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 442936 >seq143053 Length=553558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||| | || | | ||||| Sbjct 185747 CACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTGTGACCATCCTC 185688 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || | |||||| ||| ||| | |||||||||||| Sbjct 185687 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCTTG 185628 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || ||| || | ||| ||||| || Sbjct 185627 GATCTTCGCCTTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 185568 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 185567 GCCAGTAAGGGTCTTGACGAAGATCTGCAT 185538 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||| | || | ||||| Sbjct 191462 CACCAAGTGTACAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTGCGACCATCCTC 191403 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || | |||||| |||| ||| | |||||||||||| Sbjct 191402 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCAGGGGGATGCCCTCTTTGTCCTA 191343 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || ||| || | ||| ||||| || Sbjct 191342 GATCTTCGCCTTCACATTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 191283 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 191282 GCCAGTAAGGGTCTTGACGAAGATCTGCAT 191253 >SEQ17609 Length=187100 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||| | || | ||||| Sbjct 164098 CACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGACCATCCTC 164157 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 164158 AAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 164217 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || ||| || | ||| ||||| || Sbjct 164218 GATCTTCGCCTTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 164277 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| |||||||| Sbjct 164278 GCCGGTGAGGGTCTTCACAAAGATTTGCAT 164307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413160904831966