Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq218049 95.1 9e-15 seq232474 86.0 4e-12 >seq218049 Length=338111 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTC 43971 ||||| || || ||| |||||| ||||| || ||||| | || || | |||| || Sbjct 175199 ACCAAGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCAAAAGTGTGTC-CATCCTC 175141 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||| || || |||||||||||||| |||||||| | || | || || || ||| Sbjct 175140 AAGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 175081 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || |||||| | ||| ||||| | | ||| || |||| || || || || Sbjct 175080 GATCTTCGCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTT 175021 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | ||||||||||| ||||||||| Sbjct 175020 GCCGGTGAGGGTCTTCACAAAGATTTGCATG 174990 >seq232474 Length=955513 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 ||||| || || ||| |||||||| || || ||||| | | || || |||| || Sbjct 317746 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGCAAGAGTG-CGTCCATCCTC 317804 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||| || || ||||| ||||||||||||||||| | || | || ||||| || Sbjct 317805 AAGTTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCTGGGGGGATGCCCTCTTTGTCCTG 317864 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || |||||| || | | || || | | ||| || |||| || || || || Sbjct 317865 GATCTTCGCTTTGACATTATCGATCGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTT 317924 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | ||||||||||| ||||||||| Sbjct 317925 GCCGGTGAGGGTCTTCACAAAGATTTGCATG 317955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353569347120972