Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq246880 131 1e-25 seq226103 125 6e-24 seq174645 125 6e-24 seq139557 122 7e-23 seq139814 116 3e-21 SEQ30503 116 3e-21 seq221197 109 5e-19 seq220662 87.8 2e-12 seq158652 87.8 2e-12 SEQ62296 86.0 5e-12 SEQ31693 86.0 5e-12 >seq246880 Length=246641 Score = 131 bits (144), Expect = 1e-25 Identities = 179/247 (72%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| |||| || | || |||| ||| ||||||| Sbjct 25708 ACGCCGGTGGACCCGAAGCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 25649 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| | |||| || ||||||||| | ||||| || | | Sbjct 25648 GCGACGTCCGG---CGTGGCGATCCTCTCGACGACCAGCTGCGCGACGCGGTCCCCGGGC 25592 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 || || |||| ||| || |||| |||||| || || ||||| ||| ||| |||| Sbjct 25591 TTGACGGCGAAGTCGGCGT--CCGAGTGGTTGAAGAGGACGACGCCGACGGGGCCCCGGT 25534 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| ||||||| |||||| || || | Sbjct 25533 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 25474 Query 5736 GGGGAGC 5742 | || || Sbjct 25473 GCGGCGC 25467 >seq226103 Length=844501 Score = 125 bits (138), Expect = 6e-24 Identities = 178/247 (72%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| ||||| |||| || | || |||| ||| ||||||| Sbjct 422535 ACGCCGGTGGATCCGAACCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 422594 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| | |||| || ||||||||| | ||||| || | | Sbjct 422595 GCGACGTCCGG---CGTGGCGATCCTCTCGACGACCAGCTGCGCGACGCGGTCCCCGGGC 422651 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 || || |||| ||| || |||| |||||| || || ||||| ||| ||| |||| Sbjct 422652 TTCACGGCGAAGTCGGCGT--CCGAGTGGTTGAAGAGGACGACGCCGACGGGGCCCCGGT 422709 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| ||||||| |||||| || || | Sbjct 422710 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 422769 Query 5736 GGGGAGC 5742 | || || Sbjct 422770 GCGGCGC 422776 >seq174645 Length=299719 Score = 125 bits (138), Expect = 6e-24 Identities = 172/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| | || | || |||| ||| | ||||||| Sbjct 192284 ACGCCGGTGGACCCGAACCCGCCCTCCCCGCGGAGGGTGGCGTCGAGGTCCTCCACCTCG 192225 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | || | ||||| |||||| | |||||||| | ||| Sbjct 192224 GCGACCTCCGGCGTCGCGATCAC-CTGGACGATCATCTGCGCAACGCGGTCGCCAGGCTT 192166 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||| || | |||| |||||| ||||| |||||||| |||||||||| Sbjct 192165 CACGGCGAAGTCCGCCT--CCGAGTGGTTGAAGAGCACGACGCCCACAGGGCCGCGGTAG 192108 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| ||||| || ||||||||||||||| |||||| | ||||||||| || Sbjct 192107 TCGGCGTCGATCACCCCGGCGCCCACGTCGATGGCGTGCTTCAGCGCCAGGCCCGA 192052 >seq139557 Length=149248 Score = 122 bits (134), Expect = 7e-23 Identities = 172/236 (73%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| | || | || |||| ||| | ||||||| Sbjct 146671 ACGCCGGTGGACCCGAACCCGCCCTCCCCGCGGAGGGTGGCGTCGAGGTCCTCCACCTCG 146730 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || | | ||| | | | || | ||||| |||||| | |||||||| | ||| Sbjct 146731 GCGACCTCCGCGT-CGCGATCAC-CTGGACGATCATCTGCGCAACGCGGTCGCCAGGCTT 146788 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||| || | |||| |||||| ||||| |||||||| |||||||||| Sbjct 146789 CACGGCGAAGTCCGCCT--CCGAGTGGTTGAAGAGCACGACGCCCACAGGGCCGCGGTAG 146846 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| ||||| || ||||||||||||||| |||||| | ||||||||| || Sbjct 146847 TCGGCGTCGATCACCCCGGCGCCCACGTCGATGGCGTGCTTCAGCGCCAGGCCCGA 146902 >seq139814 Length=16632 Score = 116 bits (128), Expect = 3e-21 Identities = 176/247 (71%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| |||| || | || |||| ||| ||||||| Sbjct 1660 ACGCCGGTGGACCCGAAGCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 1719 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| | |||| || ||||||||| | ||||| || | | Sbjct 1720 GCGACGTCCGG---CGTGGCGATCCTCTCGATGACCAGCTGCGCGACGCGGTCCCCGGGC 1776 Query 5618 TTTACCTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 | || |||| ||| | | |||| |||||| || | || || ||| ||| |||| Sbjct 1777 CTCACGGCGAAGTCG--GCGTCCGAGTGGTTGAAGAGGATGACCCCGACGGGGCCCCGGT 1834 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| ||||||| |||||| || || | Sbjct 1835 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 1894 Query 5736 GGGGAGC 5742 | || || Sbjct 1895 GCGGCGC 1901 >SEQ30503 Length=62412 Score = 116 bits (128), Expect = 3e-21 Identities = 176/247 (71%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| |||| || | || |||| ||| ||||||| Sbjct 44479 ACGCCGGTGGACCCGAAGCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 44538 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| | |||| || ||||||||| | ||||| || | | Sbjct 44539 GCGACGTCCGG---CGTGGCGATCCTCTCGATGACCAGCTGCGCGACGCGGTCCCCGGGC 44595 Query 5618 TTTACCTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 | || |||| ||| | | |||| |||||| || | || || ||| ||| |||| Sbjct 44596 CTCACGGCGAAGTCG--GCGTCCGAGTGGTTGAAGAGGATGACCCCGACGGGGCCCCGGT 44653 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| ||||||| |||||| || || | Sbjct 44654 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 44713 Query 5736 GGGGAGC 5742 | || || Sbjct 44714 GCGGCGC 44720 >seq221197 Length=447236 Score = 109 bits (120), Expect = 5e-19 Identities = 113/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 5590 GATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA--GTTG 5647 ||||| |||||| | ||||| || | ||| || | || || | ||||| |||| Sbjct 174866 GATCATCTGCGCGACGCGGTCACCGGGCTTCACGGCAAAGTCCACCT--CCGAATGGTTG 174809 Query 5648 AACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCG 5707 || ||||| || |||||| |||||||||||| ||||| ||||| || |||||||||||| Sbjct 174808 AAGAGCACGACACCCACGGGGCCGCGGTAGTCAGCGTCGATCACCCCGGCGCCCACGTCG 174749 Query 5708 ATGAAGTGCTTGACCGCCAGGCCGGA 5733 ||| ||||||| | ||||||||| || Sbjct 174748 ATGGAGTGCTTCAGCGCCAGGCCCGA 174723 >seq220662 Length=175265 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 5590 GATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAA 5649 || ||||||||| | | ||| | | ||| || |||| ||| | | | |||||| Sbjct 38523 GACCAGCTGCGCCACGCAGTCCCTGGGCTTCACGGCGAAGTCGACGCCGGAGTGGTTGAA 38464 Query 5650 CAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGAT 5709 || | ||||| ||| ||| |||||||||||||| | ||||||||||||||||||||| Sbjct 38463 GAGGATGACGCCGACGGTGCTCCGGTAGTCGGCGTCCACCACGCCCGCGCCCACGTCGAT 38404 Query 5710 GAAGTGCTTGACCGCCAG 5727 | ||| ||| |||||| Sbjct 38403 GGAGTACTTCCACGCCAG 38386 >seq158652 Length=11240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 5590 GATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAA 5649 || ||||||||| | | ||| | | ||| || |||| ||| | | | |||||| Sbjct 9319 GACCAGCTGCGCCACGCAGTCCCTGGGCTTCACGGCGAAGTCGACGCCGGAGTGGTTGAA 9260 Query 5650 CAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGAT 5709 || | ||||| ||| ||| |||||||||||||| | ||||||||||||||||||||| Sbjct 9259 GAGGATGACGCCGACGGTGCTCCGGTAGTCGGCGTCCACCACGCCCGCGCCCACGTCGAT 9200 Query 5710 GAAGTGCTTGACCGCCAG 5727 | ||| ||| |||||| Sbjct 9199 GGAGTACTTCCACGCCAG 9182 >SEQ62296 Length=459070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 5490 GCTCGGTG--CGCACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAG 5547 |||||| | | |||||| |||||||||||||| || | || | | ||| |||| || Sbjct 4863 GCTCGGAGTTCACACGCCGGTGGACCCGAATCCTCCCTCCCCCCGGACGGTAGCGTCGAG 4922 Query 5548 GCACGCCACCTCTTCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTC 5606 | | ||||||| | || | || ||| | | | || | ||||| ||| || || Sbjct 4923 GTCCTCCACCTCGGCGACCTTCGGCGTCGCGATCAC-CTGGAGGATCATCTGTGCGATGT 4981 Query 5607 GGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCAC 5664 || |||| | ||| || |||| || | |||| |||||| ||||| | |||||| Sbjct 4982 GGCCGCCGGGCTTCACGGCGAAGTCCGCCT--CCGAGTGGTTGAAGAGCACGAGGCCCAC 5039 Query 5665 GTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTG 5715 |||||||||||| ||||| ||||| || ||||||| |||| ||||| Sbjct 5040 CGGGCCGCGGTAGTCCGCGTCGATCACCCCTGCGCCCATGTCGGGAAAGTG 5090 >SEQ31693 Length=34845 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 5490 GCTCGGTG--CGCACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAG 5547 |||||| | | |||||| |||||||||||||| || | || | | ||| |||| || Sbjct 34280 GCTCGGAGTTCACACGCCGGTGGACCCGAATCCTCCCTCCCCCCGGACGGTAGCGTCGAG 34221 Query 5548 GCACGCCACCTCTTCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTC 5606 | | ||||||| | || | || ||| | | | || | ||||| ||| || || Sbjct 34220 GTCCTCCACCTCGGCGACCTTCGGCGTCGCGATCAC-CTGGAGGATCATCTGTGCGATGT 34162 Query 5607 GGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCAC 5664 || |||| | ||| || |||| || | |||| |||||| ||||| | |||||| Sbjct 34161 GGCCGCCGGGCTTCACGGCGAAGTCCGCCT--CCGAGTGGTTGAAGAGCACGAGGCCCAC 34104 Query 5665 GTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTG 5715 |||||||||||| ||||| ||||| || ||||||| |||| ||||| Sbjct 34103 CGGGCCGCGGTAGTCCGCGTCGATCACCCCTGCGCCCATGTCGGGAAAGTG 34053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428589779722568