Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq105865 107 5e-18 seq217728 91.5 4e-13 seq166636 86.0 2e-11 >seq105865 Length=238993 Score = 107 bits (118), Expect = 5e-18 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| |||| ||| || || ||| | |||||| | || | Sbjct 96159 ATGAAAGATGATAGCATTGAGGGAATCTATGATACTCTCAAGGAATGTGCTGTCATAAGC 96218 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || || |||||||| || | ||||| ||||||| || | ||||| || Sbjct 96219 AAATCTGCTGGAGGGATTGGTGTCTCAGTTCACAACATTCGTGCTACTGGG-AGTTATAT 96277 Query 363741 TCGCGGCACAGG-GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || ||| |||| | || |||||| | ||||| ||| | ||||| || | ||| Sbjct 96278 TCGAGGAACAAATGGGACA-TCCAATGGGATTGTTCCTATGTTACGTGTCTTCAATGATA 96336 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||| | || || || ||||||||||| ||| | || || |||||| Sbjct 96337 CTGCTCGTTATGTAGATCAGGGTGGAGGCAAGAGAAAGGGTGCGTTT 96383 >seq217728 Length=151490 Score = 91.5 bits (100), Expect = 4e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | |||||| | || Sbjct 38996 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTCTGAAGGAATGTGCTGTCATAAGT 39055 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || ||| || ||||||||||| || | |||||| ||||||| || || ||| Sbjct 39056 AAATCTGCTGGAGGAATTGGTGTTTCTGTTCACAATATTCGTGCTATTGGGAGCTATATT 39115 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || ||| ||| || |||||| | ||||| ||| | ||||| || | ||||| Sbjct 39116 CGAGGAACAAATGGAACATCCAATGGGATTGTTCCTATGTTACGTGTCTTCAATGATACT 39175 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 || | || || || || |||||||| ||| | || || |||| Sbjct 39176 GCTCGTTATGTAGATCAAGGTGGAGGCAAGAGAAAGGGTGCGT 39218 >seq166636 Length=45847 Score = 86.0 bits (94), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | ||||| |||||| ||| ||||| || | ||| || || | | Sbjct 34069 TGCTTTCTTGTCTGCATGAAAGACGATAGCATTGAGGGAATTTATGATACTCTCTCGGAA 34128 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 || ||| || ||| ||| || || |||||||| || || ||||| ||||| || Sbjct 34129 TGCGCTTCCATAAGCAAATCTGCTGGAGGGATTGGTGTCTCAATTCACAACGTTCGGGCT 34188 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | |||||||||||| || || ||| || ||||| | || |||||||| || Sbjct 34189 ACTGG-CAGTTACATTCGTGGAACTAATGGAACTTCTAATGGAATTGTACCCATGCTACG 34247 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| || | | ||||| | || || || || || ||||| ||| | ||||| Sbjct 34248 TGTTTTCAATGACACTGCACGCTATGTTGATCAAGGCGGAGGCAAGAGAAAAGG 34301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298687187221298