Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq220121 98.7 9e-16 SEQ37921 86.0 5e-12 seq232474 84.2 2e-11 >seq220121 Length=379296 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||||||| | ||||| | || || ||| | | Sbjct 17224 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 17283 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| || || || ||||| ||||| Sbjct 17284 GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 17343 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | || ||||| || || |||| | | | | ||||||||| Sbjct 17344 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 17403 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || ||||||||||| || ||||| Sbjct 17404 ATCCAAAAAGAATCCACTCTTCAT 17427 >SEQ37921 Length=51049 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || |||||||||||||| | || || | || || ||| | |||||||| Sbjct 46633 TTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCTGACACCATT 46574 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | || || ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 46573 GATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAGCAGAGGCTT 46514 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || |||||||| || |||| | | | | ||||||||||| |||||| Sbjct 46513 ATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAACATCCAAAAA 46454 Query 24180 GAATCTACAATTCAT 24194 ||||| || ||||| Sbjct 46453 GAATCCACTCTTCAT 46439 >seq232474 Length=955513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || || | || ||| |||| || ||| | | Sbjct 317954 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 317895 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| ||||| |||||||| ||||| || || || || Sbjct 317894 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 317835 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168 || | |||| | | |||||||||||| || ||| ||| | | | || ||||| | Sbjct 317834 CAACGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTT--GCTGATTACA 317777 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||| ||||||||||| || Sbjct 317776 ACATCCAAAAAGAATCCAC 317758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428471782953045