Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq150964 398 1e-105 seq253083 389 7e-103 >seq150964 Length=68769 Score = 398 bits (440), Expect = 1e-105 Identities = 601/844 (71%), Gaps = 23/844 (3%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | |||| |||||||||||||||| | ||||| || ||| || Sbjct 25615 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 25556 Query 42372 GCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | |||||| | | || || | |||| ||| || || | || ||| Sbjct 25555 CGCCACTGGGACACGACGCTCTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 25496 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||||||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 25495 TTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGAC 25436 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| | ||||| | |||||||||||||||||| ||||| |||||| | ||| Sbjct 25435 GTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 25376 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || ||| ||||| || ||||||| | || ||||||| || ||||||| || Sbjct 25375 TCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGAC 25319 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 | || ||| ||||| || || || ||| | | ||||| |||||||||||| Sbjct 25318 CGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTC 25259 Query 42666 AACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||||||||| | || ||| |||| ||| | | || ||||| || ||| Sbjct 25258 CGCTGGATCGACGGCGGGGAGCGC----TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGT 25203 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC 42784 |||||||||||||||||||||| ||||| | ||||||||||||||||| || | | Sbjct 25202 CGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCT 25143 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | || Sbjct 25142 CATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGA 25083 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTC 42902 ||| ||||||||||| | ||| | |||| | |||| || || || || ||| Sbjct 25082 CTTCGCCTGCCTCCTCT--ACGA-CATCCTCCGCGGCAAG--CTGGACGAGTCCCGCGTC 25028 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 | ||| | | ||||||||||| ||||||| ||||||| || | |||| ||| Sbjct 25027 TTCGAGATCGTGTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCC 24968 Query 42963 GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 | || |||||||||||| |||||||||| || |||||||| ||| |||||||||| Sbjct 24967 TGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGAC 24908 Query 43023 CATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTT 43081 | || || || | | |||| || || |||||| | | ||| ||||||| Sbjct 24907 CGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTG 24849 Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 |||||| ||||||| || |||||||||||||||| |||||||||||||||| ||| || Sbjct 24848 GATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 24789 Query 43142 CCAG 43145 |||| Sbjct 24788 CCAG 24785 >seq253083 Length=222612 Score = 389 bits (430), Expect = 7e-103 Identities = 601/845 (71%), Gaps = 25/845 (3%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||||||||||||| | ||||| || ||| || Sbjct 123827 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 123886 Query 42372 GCCGGCTGGGAGTC-ACTGTCTGAGAACGAAAAGTTT---TTCCTCAAAAACATACTGGC 42427 | |||||| | || ||| ||||| || ||| || || | || || Sbjct 123887 CGCCACTGGGACACCACCCTCTCC-AACGACGAGCGCCACTTCATCTCCCACGTGCTCGC 123945 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||||||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 123946 CTTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTCGCCTCCAGGTTCATGTCCGA 124005 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 |||||| | ||||| | |||||||||||||||||| ||||| |||||| | || Sbjct 124006 CGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 124065 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||| ||| ||||| || ||||||| | || ||||||| || ||||||| | Sbjct 124066 CTCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGA 124122 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | | || ||| ||||| || || || ||| | | ||||| |||||||| || Sbjct 124123 CCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCT 124182 Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 | ||||||||| | || ||| |||| |||| | | || ||||| || || Sbjct 124183 CCGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCATCGTCGCCTTCGCCTGCG 124238 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 ||||||||||||||||||| ||| ||||| | ||||||||||||||||| || | | Sbjct 124239 TCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGC 124298 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | | Sbjct 124299 TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCG 124358 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901 |||| ||||||||||| | ||| | ||| | |||| || || || || || Sbjct 124359 ACTTCGCCTGCCTCCTCT--ACGA-CATCCTGCGCGGCAAG--CTGGACGAGTCCCGCGT 124413 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | ||| || | ||||||||||| ||||||| ||||||| || | ||||||| Sbjct 124414 CTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCC 124473 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | | || |||||||||||| |||||||||| || |||||||| ||| ||| ||||| Sbjct 124474 CTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCCGA 124533 Query 43022 CCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 || || || || | | |||| || || |||||| | | ||| ||||||| Sbjct 124534 CCGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACT 124592 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 |||||| ||||||| || |||||||||||||||| |||||||||||||||| ||| | Sbjct 124593 GGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGT 124652 Query 43141 ACCAG 43145 ||||| Sbjct 124653 ACCAG 124657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941040634978640