Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq253083 172 1e-37 seq150964 167 5e-36 seq273488 96.9 8e-15 >seq253083 Length=222612 Score = 172 bits (190), Expect = 1e-37 Identities = 311/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||||||| | ||||| || || || | || ||||| ||| Sbjct 124208 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTC 124267 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 124268 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 124327 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || | || Sbjct 124328 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTG 124387 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || || ||| | ||| || | || || || || | | Sbjct 124388 CGCGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATC 124444 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || ||| ||| | ||||||||| || ||| Sbjct 124445 GAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTC 124504 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 124505 ATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCATGGCGCTGGGCTGCAAGAAG 124564 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| ||| ||||| || | || ||||||||||| ||||| || || || || Sbjct 124565 CTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 124624 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 124625 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 124656 >seq150964 Length=68769 Score = 167 bits (184), Expect = 5e-36 Identities = 310/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||||||| | ||||| || || || | || || || ||| Sbjct 25234 TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 25175 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 25174 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 25115 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || | ||| Sbjct 25114 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTC 25055 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || || ||| | ||| | | || || || || | | Sbjct 25054 CGCGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATCGTGTCCGAGGCCGTGGACATC 24998 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || ||| ||| | ||||||||| || ||| Sbjct 24997 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTC 24938 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 24937 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTGCAAGAAG 24878 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| ||| ||||| || | || ||||||||||| ||||| || || || || Sbjct 24877 CTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 24818 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 24817 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 24786 >seq273488 Length=139264 Score = 96.9 bits (106), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| | ||| || | || || || | || ||| ||| | ||||||||| || || Sbjct 59509 CGAGAGGGAGTTTGTCTGTGATGCGCTCCCCTGCGCGCTCGTCGGCATGAACGACGACCT 59450 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||||| |||||| || | |||| ||| | || | |||| Sbjct 59449 CATGAGCCAGTACATCGAGTTCGTTGCCGACAGCCTGCTCATGGCGTTGGGATGCAAGAA 59390 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 ||||||| ||| ||||| || || |||||||||| | | || || || || || Sbjct 59389 GCTGTACAATGCCACCAACCCATTCAACTGGATGGAGCTCA-TCCCCTGCAGGGCAAGAC 59331 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| | ||||| ||||| ||||| || || || Sbjct 59330 CAACATATTCGAGAAGCGCGTCAGCGAGTAGCA 59298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1098931345294650