Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq220121 93.3 3e-14 seq218049 86.0 4e-12 seq190873 86.0 4e-12 >seq220121 Length=379296 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| | || |||||||| || ||||| |||||||||| | | Sbjct 16766 CCACCTCTCAGGCGGAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAAT--CAG 16709 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| | || |||| || |||||||| |||| | | ||||||||| | Sbjct 16708 CCAATGTTCGGCCATCCTCTAGCTGCTTGCCAGCAAATATGAGCCTCTGTTGGTCCGGAG 16649 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| ||| ||| ||| ||| | || || ||||| | | || | Sbjct 16648 GAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTCGA 16589 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || || || ||||| || || || ||||| || ||||| Sbjct 16588 CCTCAAGAGTGATAGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 16540 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| ||||||||||| || || || ||||||||||| | | | | | || || Sbjct 16976 ACTAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCCAATGTGCGCCCATCCTCA 16917 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | || | | ||||||||| ||| || || |||||||| Sbjct 16916 AGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGG 16857 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || ||| | || ||||| || | | || || |||| || ||||| || Sbjct 16856 ATCTTTGC-CTTGACATTGTCGATAGTGTCCGAACTCTCAACCTCTAGAGTTATGGTCTT 16798 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| ||||| || ||||| Sbjct 16797 CCCGGTAAGAGTTTTCACAAAGATCTGCAT 16768 >seq218049 Length=338111 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTT 15025 ||| || || ||||| || ||||| || ||||||||||| || | | || | || | Sbjct 175200 AACCAAGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCAAAAGTGTGTC-CATCCT 175142 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | ||| ||||| || ||||||| ||||| ||||| || || || |||||||| Sbjct 175141 CAAGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTT 175082 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || || ||| ||| | || || |||||| | || || || | ||| ||||| | Sbjct 175081 GGATCTTCGCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCT 175022 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || || || ||||| |||||||| Sbjct 175021 TGCCGGTGAGGGTCTTCACAAAGATTTGCAT 174991 >seq190873 Length=246963 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 14977 AGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTT 15034 |||||||| || ||||| |||||||||||| | ||| || | || |||| || | Sbjct 126463 AGGGTAGACTCCTTTTGGATGTTGTAATCG--GCCAATGTCCGGCCATCCTCTAGCTGCT 126406 Query 15035 TGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGC 15094 ||||||| |||| | | ||||||||| ||||| || |||||||| ||| ||| Sbjct 126405 TGCCAGCAAATATGAGCCTCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGG 126346 Query 15095 TTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCA 15154 ||| ||| | || || ||||| | | || || || | || || || || ||||| | Sbjct 126345 CTTTAACATTGTCAATGGTATCTGAACTCTCGACCTCAAGAGTGATAGTCTTGCCTGTGA 126286 Query 15155 GAGTTTTTACAAAAATTTGC 15174 | || || ||||| || ||| Sbjct 126285 GGGTCTTGACAAAGATCTGC 126266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356174843356115