Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq253083 188 1e-42 seq150964 187 4e-42 seq273488 105 1e-17 seq260785 91.5 2e-13 >seq253083 Length=222612 Score = 188 bits (208), Expect = 1e-42 Identities = 530/807 (66%), Gaps = 30/807 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 124639 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 124580 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || ||||| | || || ||| |||| | ||| ||||| || || Sbjct 124579 GGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCCACGAACTC 124520 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||| ||||| || | Sbjct 124519 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGCAGCGCGTCGCA 124460 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| || |||| |||| || |||| Sbjct 124459 GACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAAGACGCGGGACTCGT- 124401 Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||||||| || |||| || | |||||||| || |||||||||||||| Sbjct 124400 --CCAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 124349 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| Sbjct 124348 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTT 124289 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061 |||||||| || |||| |||| ||| | ||| || ||||| ||||| ||| || | Sbjct 124288 CTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAGGCGA 124230 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 | || |||| | ||| | || ||| | | | | | |||| | |||||| Sbjct 124229 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGGGCCCAG 124174 Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 || ||| ||||| ||||||| ||| |||| |||| || | | ||||| Sbjct 124173 TCGGCC----TTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 124118 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| | || ||| || | || ||| |||||||| || | ||| | || Sbjct 124117 CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTT 124058 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296 |||||||| ||||| ||| |||||| | ||||| |||||| || | Sbjct 124057 CTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACAT 123998 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | ||||||| ||| || ||||| || | ||| Sbjct 123997 GAACCTGGAGGCGAGGTTCTCCAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 123938 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| |||||||| || | |||||| ||| ||| | | |||||||| | |||| Sbjct 123937 GTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGGGTGGTGTCCCAGTGGCGCGCGTCGGA 123878 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || ||||| || ||| |||| Sbjct 123877 GGAGAGGTCCACCTCCTCGGCGGTCCA 123851 >seq150964 Length=68769 Score = 187 bits (206), Expect = 4e-42 Identities = 528/804 (66%), Gaps = 24/804 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 24803 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 24862 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || ||||| | || || ||| |||| | ||| || || || || Sbjct 24863 GGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 24922 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||| || | Sbjct 24923 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGGAGCGCGTCGCA 24982 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| ||| |||| |||| || |||| Sbjct 24983 GACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAAGACGCGGGACTCGT- 25041 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 || ||||||| | | ||| | | |||||||| || |||||||||||||| || Sbjct 25042 --CCAGCTTGCCGCGGAGGATGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCC 25096 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| || Sbjct 25097 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTTCTT 25156 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACG 160064 |||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || | Sbjct 25157 GAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGG 25215 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 | |||| | ||| | || ||| | | | | | |||| | ||||| || Sbjct 25216 CGACGATGCGCTCCGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGCGCCCAGTCG 25271 Query 160124 GCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 ||| ||||| ||||||| ||| |||| |||| || | | ||||| ||| Sbjct 25272 GCC----TTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTC 25327 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | || ||| || | || ||| |||||||| || | ||| | || || Sbjct 25328 GACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTTCTC 25387 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| | ||||| |||||| || |||| Sbjct 25388 GATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACATGAA 25447 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 ||| | || || | || | ||||| | ||| || ||||| || | |||||| Sbjct 25448 CCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCACGTG 25507 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGC 160419 |||||||| || | |||||| ||| ||| || | |||||||| | |||| || Sbjct 25508 GGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTCCCAGTGGCGCGCGTCGGAGGA 25567 Query 160420 CAAATCAACCTCTTCCGCGCTCCA 160443 | || ||||| || ||| |||| Sbjct 25568 GAGGTCCACCTCCTCGGCGGTCCA 25591 >seq273488 Length=139264 Score = 105 bits (116), Expect = 1e-17 Identities = 232/343 (68%), Gaps = 10/343 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| | |||||||||||||| || || || ||||| | ||||||||| Sbjct 59315 CTTCTCGAATATGTTGGTCTTGCCCTGCAGGGG-ATGAGCTCCATCCAGTTGAATGGGTT 59373 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | | | || ||||| |||| | ||| |||| ||||| || || || || Sbjct 59374 GGTGGCATTGTACAGCTTCTTGCATCCCAACGCCATGAGCAGGCTGTCGGCAACGAACTC 59433 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || ||| || || | ||| ||||||||| || | Sbjct 59434 GATGTACTGGCTCATGAGGTCGTCGTTCATGCCGACGAGCGCGCAGGGGAGCGCATCACA 59493 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 | ||||||| |||| || || | || |||| ||| |||| | ||| | | || Sbjct 59494 GACAAACTCCCTCTCGATATCCATGGCCTCGGACACGATCTTGAAAACA---TAGGACTT 59550 Query 159889 --CG-GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 || ||||||| | | || ||| | | |||||||| || ||||||||||| || || Sbjct 59551 GTCGAGCTTGCCGCAGAGGTTGTCAT---AGAGGAGGCATGCGAAGTCGCAGTGTAGACC 59607 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGC 159988 |||||| || ||||||| || |||||| | | ||| ||||||| Sbjct 59608 CTCGTCTCGGGAGATGAGCTAGTTGGAGAAGGTGACGCCCGGC 59650 >seq260785 Length=76646 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/178 (72%), Gaps = 9/178 (5%) Strand=Plus/Minus Query 159814 GGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA 159873 ||||||||| || | | |||||| |||| || || || || |||| ||||||| | Sbjct 10355 GGGGAGCGCGTCGCAGATGAACTCCCTCTCGATATCCACGGCCTCGGAGACAATCTCGAA 10296 Query 159874 GACACG---TTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAA 159930 ||| || || || | |||||| || | | ||| | | |||||||| || || Sbjct 10295 GACGCGGGATTTGT---CGAGCTTGCTGAAGAGGATGTCGT---AGAGGAGGCAGGCGAA 10242 Query 159931 GTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGC 159988 |||| ||||||| ||||| || || ||||||| ||||||||| | ||||||||||| Sbjct 10241 GTCGTAGTGCAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGC 10184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792377732825840