Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq229913 95.1 1e-14 seq219044 91.5 2e-13 SEQ44094 91.5 2e-13 seq105865 84.2 2e-11 seq166636 82.4 9e-11 >seq229913 Length=128461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 128056 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 127997 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| | | |||| || ||||| | ||| ||||| || | ||| || | ||||| Sbjct 127996 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 127938 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| ||| |||||||| |||| || | | ||||| ||||| || | || | Sbjct 127937 ACATATGTTGTGGTCTTTCCACAACCTTCCCACCAACTTTCAGTAGATAAGACCTCTCAA 127878 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 ||| ||||||||||| | | ||| |||||| |||||| ||| || Sbjct 127877 GTGTCTTAAAACCAAAGAAATCGTAGTCAAAGTCTCTATCATAAATTAT 127829 >seq219044 Length=377041 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 256219 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 256160 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| | | |||| || ||||| | ||| ||||| || | ||| || | ||||| Sbjct 256159 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 256101 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| ||| |||||||| |||| || | | ||||| ||||| || | || | Sbjct 256100 ACATATGTTGTGGTCTTTCCACAACCTTCCCACCAACTTTCAGTAGATAAGACCTCTCAA 256041 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || ||||||||||| | | ||| |||||| |||||| ||| || Sbjct 256040 GCGTCTTAAAACCAAAGAAATCGTAGTCAAAGTCTCTATCATAAATTAT 255992 >SEQ44094 Length=747601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 390105 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGGGACATCATGTG 390164 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| | | |||| || ||||| | ||| ||||| || | ||| || | ||||| Sbjct 390165 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 390223 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| ||| |||||||| |||| || | | ||||| ||||| || | || | Sbjct 390224 ACATATGTTGTGGTCTTTCGACAACCTTCCCACCAACTTTCAGTAGATAAGACCTCTCAA 390283 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || ||||||||||| | | ||| |||||| |||||| ||| || Sbjct 390284 GCGTCTTAAAACCAAAGAAATCGTAGTCAAAGTCTCTATCATAAATTAT 390332 >seq105865 Length=238993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACAT 48164 || ||||| | || |||| |||||| | || || | || | | ||||| ||| | Sbjct 97050 TCATATTTCTTGTACAACTCCTCAAACTTCTCGCCCCAGCAATCAGCCAACCCTGGAGCT 96991 Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCT 48224 ||||||||||| | || ||||||||||||| ||||| |||||| ||| |||| ||| Sbjct 96990 TCATTAGGACAAAACAGGGACCAATCCTCATTATTTTGTACTCTTTGCATGAATAGATCA 96931 Query 48225 GGTATCCAAAGAGCTATAAATAAATCCCT 48253 || | ||| ||||| | || | |||||| Sbjct 96930 GGAACCCAGAGAGCAAAGAAAAGATCCCT 96902 >seq166636 Length=45847 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 33962 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 33903 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| | | |||| || ||||| | ||| ||||| || | ||| || | ||||| Sbjct 33902 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 33844 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| ||| |||||||| |||| || | | ||||| | ||| || | || | Sbjct 33843 ACATATGTTGTGGTCTTTCCACAACCTTCCCACCAACTTTCAGTAAATAAGACCTCTCAA 33784 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || ||||||||||| | | ||| ||||| |||||| ||| || Sbjct 33783 GCGTCTTAAAACCAAAGAAATCGTAGTCGAAGTCTCTATCATAAATTAT 33735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560145360987960