Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq193449 120 2e-21 seq177439 114 1e-19 seq161665 111 1e-18 seq123771 100 2e-15 seq277975 89.7 4e-12 seq240551 89.7 4e-12 seq189620 89.7 4e-12 seq154107 89.7 4e-12 SEQ54043 89.7 4e-12 SEQ29207 89.7 4e-12 seq251427 87.8 1e-11 seq213123 87.8 1e-11 SEQ46145 87.8 1e-11 >seq193449 Length=151427 Score = 120 bits (132), Expect = 2e-21 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 ||||||| ||| | |||||||| || || ||||||||||| || ||| | || || | | Sbjct 48931 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 48990 Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408 |||| || ||||| || ||||| || | ||| || || || ||||| | Sbjct 48991 TGACCAAGATTATCCCAAGGAATACAACCCTCCCTACCTCCAAGTCAGAGGTCTTTTCAA 49050 Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468 || | | ||| || ||| ||| ||| | || | ||||||||||| | || Sbjct 49051 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 49110 Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 || || ||||| ||||||| || | | || || |||||||||||||| |||| Sbjct 49111 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCGCGTG 49170 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588 | || || ||||||||||| | || ||||| ||||||||||| ||| || ||| ||| Sbjct 49171 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAATGGCATTCTGTCTGTTGCTG 49230 Query 552589 C 552589 | Sbjct 49231 C 49231 >seq177439 Length=409810 Score = 114 bits (126), Expect = 1e-19 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 ||||||| ||| | |||||||| || || ||||||||||| || ||| | || || | | Sbjct 161122 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 161181 Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408 |||| || ||||| || || || || | ||| || || || ||||| | Sbjct 161182 TGACCAAGATTATCCCAAGGAACACAACCCTCCCTACCTCCAAGTCAGAGGTCTTTTCAA 161241 Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468 || | | ||| || ||| ||| ||| | || | ||||||||||| | || Sbjct 161242 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 161301 Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 || || ||||| ||||||| || | | || || |||||||||||||| |||| Sbjct 161302 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCACGTG 161361 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588 | || || ||||||||||| | || ||||| ||||||||||| ||| || ||| ||| Sbjct 161362 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAATGGCATTCTGTCTGTTGCTG 161421 Query 552589 C 552589 | Sbjct 161422 C 161422 Score = 98.7 bits (108), Expect = 8e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || ||||| || || ||||| |||||||| || | ||||| Sbjct 158029 AAGTCACCAAGGCAGTGATCACTGTTCCTGCTTATTTCAATGACTCCCAGAGGACAGCTA 158088 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || ||||| || || ||||||| ||||| || || || ||||| | Sbjct 158089 CAAAAGATGCTGGCCGCATTGCAGGCCTGGATGTTCTCCGTATCATAAACGAGCCTACCG 158148 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 | || | | |||||||| |||| ||| Sbjct 158149 CGGCATCGTTGGCATATGGTTTTGAAAAA 158177 >seq161665 Length=100705 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| ||||| || ||||||||||| | || ||||| || |||| Sbjct 72096 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCACAGAGGCAGGCTACCAAGGATG 72037 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| |||||||| | ||||| |||||||| |||||||| || || |||||||| Sbjct 72036 CTGGTGTCATTGCTGGCATCAATGTCCTTCGTATCATCAATGAGCCAACAGCTGCTGCCA 71977 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||| | ||||| || Sbjct 71976 TTGCTTATAGTCTTGACAA 71958 >seq123771 Length=143949 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||||| || | || || || || ||||||||| ||| Sbjct 124082 ACTGTCCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATGCTGGAGTGATT 124023 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || |||||| | || |||||||| || || ||||||||||| |||| ||||| Sbjct 124022 GCAGGCCTGAATGTTATGCGCATTATCAACGAGCCAACTGCTGCTGCTATTGCTTATGGT 123963 Query 550529 CTTGATAA 550536 |||||||| Sbjct 123962 CTTGATAA 123955 >seq277975 Length=486107 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | | ||| || || || || || ||||| || | || || || || || | Sbjct 45800 ATGCTGTTGTCAGTGTCCCTGCCTACTTCAACGACTCTCAGAGACAGGCCACCAAGGAAG 45741 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || | ||||| || |||||| | || || ||||| || || ||||||||||| Sbjct 45740 CTGGAGGTTTGGCTGGTCTGAATGTTATGCGCATCATCAACGAGCCAACTGCTGCTGCTA 45681 Query 550518 TTGCATATGGACTTGATAA 550536 |||||||||| ||||| || Sbjct 45680 TTGCATATGGTCTTGACAA 45662 >seq240551 Length=99239 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 || || | || || || || || ||||| || || ||||| | || || || || || | Sbjct 22598 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCA 22539 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| || |||||||||||| |||| | | || ||||| ||||| ||||||| Sbjct 22538 AGGATGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTG 22479 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 22478 CTGCTCTGTCTTATGGA 22462 >seq189620 Length=55086 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 || || | || || || || || ||||| || || || || | || || || || || | Sbjct 25331 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAACGATGCCCAGCGGCAGGCAACCA 25390 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| || |||||||||||| |||| | | || ||||||||||| ||||||| Sbjct 25391 AGGATGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTG 25450 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 25451 CTGCTCTGTCTTATGGA 25467 >seq154107 Length=1498255 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| || || ||||| | || | || || || || |||||| Sbjct 406636 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 406695 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 406696 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 406754 >SEQ54043 Length=320892 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 || || | || || || || || ||||| || || ||||| | || || || || || | Sbjct 117896 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCA 117955 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| || |||||||||||| |||| | | || ||||| ||||| ||||||| Sbjct 117956 AGGATGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTG 118015 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 118016 CTGCTCTGTCTTATGGA 118032 >SEQ29207 Length=316728 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| || || ||||| | || | || || || || |||||| Sbjct 170988 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 170929 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 170928 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 170870 >seq251427 Length=235485 Score = 87.8 bits (96), Expect = 1e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||||||||||| |||| |||||| | || |||||||||||| Sbjct 35799 TCTTTCTGAATGTTGTAATCAGCTAATGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAA 35858 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 || || ||||||||||| |||||||| || || || || |||| Sbjct 35859 ATTAGCCTTTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGAA 35901 >seq213123 Length=295391 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 390856 TTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTT 390915 |||| || ||||||||||| | || ||||||| || | || || | | ||| Sbjct 207736 TTTCGCACAGTACCATCATATTTCACCATAATGTCCTCCATAGCCTTCACGAGCCTCCTT 207795 Query 390916 TGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCC 390975 |||||||| || || || | |||||| | ||||||| ||| | ||||||||| || || Sbjct 207796 TGGATATATCCCGTCTCAGAAGTTTTCACGGCAGTATCAATTAAACCTTCTCTACCACCC 207855 Query 390976 ATAACTTGGAAGAAAAATTCC 390996 ||| | ||||||||||||||| Sbjct 207856 ATAGCATGGAAGAAAAATTCC 207876 >SEQ46145 Length=25888 Score = 87.8 bits (96), Expect = 1e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||||||||||| |||| |||||| | || |||||||||||| Sbjct 12350 TCTTTCTGAATGTTGTAATCAGCTAATGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAA 12291 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 || || ||||||||||| |||||||| || || || || |||| Sbjct 12290 ATTAGCCTTTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGAA 12248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4014518005410110