Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq253083 275 1e-68 seq150964 275 1e-68 >seq253083 Length=222612 Score = 275 bits (304), Expect = 1e-68 Identities = 585/865 (68%), Gaps = 29/865 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 124657 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 124598 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| | ||| |||| | | || ||| |||| | ||| Sbjct 124597 CATCCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAG-CCCAGCGCCATGAGC 124540 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || || ||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 124539 AGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 124480 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| || | || |||||| |||| || | |||||| || || ||| Sbjct 124479 GCGCAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATC 124420 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||||||| | ||| ||||||| || | ||||| | |||||| Sbjct 124419 TCGAAGACGCGGGACTCGTCCAGCTTGCCGCGCAGGA---TGTCGTAGAGGAGGCAGGCG 124363 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 124362 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 124303 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| ||| | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 124302 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCC 124243 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315 || || ||||| ||| || | ||| | |||||| | | | | |||||| Sbjct 124242 TCGACGCAGGCGAAGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCA 124187 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | || |||||||| ||||| | ||| ||| || || || ||||| |||| Sbjct 124186 GCGGAGGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGA 124131 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | ||||| || ||| | ||||| Sbjct 124130 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACA 124074 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| |||||||||||||||||||| | Sbjct 124073 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGA 124014 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| || || ||||| || || || || || || | Sbjct 124013 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCCAGCACGATGCCGTCGGAGGCGG 123954 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| || || ||| | | || Sbjct 123953 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGGGTGGTGTCCC 123894 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || || | |||||||||||||| | || | Sbjct 123893 AGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGACGCCACCGCCT 123834 Query 48666 TTTTGTACATGCCCCATATGTCCGG 48690 | ||||| | |||| || | ||| Sbjct 123833 TCTTGTAGAACTCCCAGATCTGCGG 123809 >seq150964 Length=68769 Score = 275 bits (304), Expect = 1e-68 Identities = 586/865 (68%), Gaps = 29/865 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 24785 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 24844 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| | ||| |||| | | || ||| |||| | ||| Sbjct 24845 CATCCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAG-CCCAGCGCCATGAGC 24902 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 24903 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 24962 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | || | || |||||| |||| || | |||||| || ||| ||| Sbjct 24963 GCGCAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATC 25022 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||||||| | ||| ||| ||| || | ||||| | |||||| Sbjct 25023 TCGAAGACGCGGGACTCGTCCAGCTTGCCGCGGAGGA---TGTCGTAGAGGAGGCAGGCG 25079 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 25080 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 25139 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| ||| | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 25140 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 25199 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315 || || ||||| ||| || | ||||| |||||| | | | | |||||| Sbjct 25200 TCGACGCAGGCGAAGGCGACGA--TGCGCTCCG--CGAAGCGCTCCCCGCCGTCGATCCA 25255 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | ||||||||||| ||||| | ||| ||| || || || ||||| |||| Sbjct 25256 GCGGAGCGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGA 25311 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | ||||| || ||| | ||||| Sbjct 25312 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACA 25368 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| |||||||||||||||||||| | Sbjct 25369 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGA 25428 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| || || ||||| || || || || || || | Sbjct 25429 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGG 25488 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| || || ||| | | || Sbjct 25489 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTCCC 25548 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || || | ||||||||||| || | || | Sbjct 25549 AGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCACCGCCT 25608 Query 48666 TTTTGTACATGCCCCATATGTCCGG 48690 | ||||| | |||| || | ||| Sbjct 25609 TCTTGTAGAACTCCCAGATCTGCGG 25633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928278967573760