Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq253083 233 4e-56 seq150964 217 3e-51 >seq253083 Length=222612 Score = 233 bits (258), Expect = 4e-56 Identities = 572/857 (67%), Gaps = 27/857 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 123815 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTC 123874 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| || | || ||||| ||||||| || || || Sbjct 123875 TCCTCCGACGCGCGCCACTGGGACACCACCCTCTCCAACGACGAGCGCCACTTCATCTCC 123934 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| ||||| || | || Sbjct 123935 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTCGCCTCCAGG 123994 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||||| | |||||||| |||||||| |||||| Sbjct 123995 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 124054 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| || ||| | ||| ||||| |||| || | Sbjct 124055 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 124114 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | |||||||| ||| ||| | | | ||||| Sbjct 124115 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAC 124174 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| | |||||| || || | |||||| || |||||| | || ||||| Sbjct 124175 TGGGCCCTCCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCATCGTCGCCTT 124230 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| ||| || || ||| |||||||||||||||||| Sbjct 124231 CGCCTGC-GTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAAG 124288 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 124289 AAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 124348 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || ||| | || || |||||||| |||||| | | | ||| | | || || | | Sbjct 124349 CTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACATCCTGCGCGGC-AAGCTGGACGA 124404 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | | ||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct 124405 GTCCCGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 124464 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| | ||||||||||| ||||| |||| Sbjct 124465 CGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTT 124524 Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC--CT 26244 |||||||||| ||||| || | |||||| || || ||| || |||| |||| | Sbjct 124525 CGTGGCCGACCGCCTGCTCATGGC-GCTGGG-CT-GCAAGAAGCTGTACA--ACGCCACC 124579 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||||||||||| ||||| ||| ||| || | || |||||||||||||| || ||| Sbjct 124580 AACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAG 124639 Query 26305 AGGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 124640 CGCGTCGGCGAGTACCA 124656 >seq150964 Length=68769 Score = 217 bits (240), Expect = 3e-51 Identities = 569/859 (66%), Gaps = 31/859 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| |||||||||||| ||| | || || Sbjct 25627 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTC 25568 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| || | || ||||| ||||||| || || || Sbjct 25567 TCCTCCGACGCGCGCCACTGGGACACGACGCTCTCCAACGACGAGCGCCACTTCATCTCC 25508 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 25507 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 25448 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||||| | |||||||| |||||||| |||||| Sbjct 25447 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 25388 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| || ||| | ||| ||||| |||| || | Sbjct 25387 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 25328 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | |||||||| ||| ||| | | | ||||| Sbjct 25327 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAC 25268 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| | |||||| || || | |||||| || ||||| | || ||||| Sbjct 25267 TGGGCGCTCCGCTGGATCGACGGCGGGGAGCGCTTCGCG----GAGCGCATCGTCGCCTT 25212 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| || || || |||| ||||||||||||||||| Sbjct 25211 CGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAG 25154 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 25153 AAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 25094 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCAC--AAACCTTCTC 26068 || ||| | || || |||||||| ||||| | || | |||| | || || | Sbjct 25093 CTGCACTGCGACTTCGCCTGCCTCCTCTA------CGACATCCTCCGCGGCAAGCTGGAC 25040 Query 26069 AAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 || | ||||| | ||| | ||||| ||||| ||||||| |||||| Sbjct 25039 GAGTCCCGCGTCTTCGAGATCGTGTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGC 24980 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| | ||||||||||| ||||| ||| Sbjct 24979 GACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAG 24920 Query 26188 TATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC-- 26242 | || ||||||| ||||| || | |||||| || || ||| || |||| |||| Sbjct 24919 TTCGTCGCCGACCGCCTGCTCATGGC-GCTGGG-CT-GCAAGAAGCTGTACA--ACGCCA 24865 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||||||||||| ||||| ||| ||| || | || |||||||||||||| || | Sbjct 24864 CCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGA 24805 Query 26303 AGAGGGTCGGCGACTATCA 26321 || | |||||||| || || Sbjct 24804 AGCGCGTCGGCGAGTACCA 24786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925600356724160