Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq220121 87.8 2e-12 SEQ37921 87.8 2e-12 seq232474 84.2 2e-11 seq190873 82.4 6e-11 >seq220121 Length=379296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || ||||| || || |||||||| || ||| || Sbjct 17224 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 17283 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| ||| ||||| |||||| | || ||||| Sbjct 17284 GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 17343 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || |||| ||| || |||| ||||||||| Sbjct 17344 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 17403 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 17404 ATCCAAAAAGAATCCACTCTTCA 17426 >SEQ37921 Length=51049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 || || || ||||| || |||||||| || || ||||| || || ||| || Sbjct 46642 ATACAGATTTTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCT 46583 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| |||||| | || |||||| Sbjct 46582 GACACCATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 46523 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || ||| |||| ||| || |||| ||||||||| Sbjct 46522 CAGAGGCTTATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAAC 46463 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 46462 ATCCAAAAAGAATCCACTCTTCA 46440 >seq232474 Length=955513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || ||||| ||| ||| || |||| Sbjct 317954 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 317895 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || ||| ||||||||||| | ||| ||| || Sbjct 317894 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 317835 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| ||||| ||| | || ||| ||| | || ||||| ||| Sbjct 317834 CAACGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTTGCTGATTACAAC 317775 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||||||||| ||||| ||| |||| Sbjct 317774 ATCCAAAAAGAATCCACTCTCCACTTGGT 317746 >seq190873 Length=246963 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| |||||| | || |||||| ||||| ||||||||||| || || || |||| Sbjct 127270 GACAAGGAGGGAATTCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAG 127329 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| || |||| ||||||||||| ||||||||||| ||||| || Sbjct 127330 GATGGGCGTACCTTGGCAGATTATAACATCCAAAAAGAATCCACTCTTCA 127379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423956014692381