Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq190873 107 3e-18 seq218049 96.9 6e-15 SEQ37921 96.9 6e-15 seq158206 89.7 9e-13 SEQ67646 89.7 9e-13 seq232474 84.2 4e-11 >seq190873 Length=246963 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||| | || || ||||| || | |||| ||| || |||||| || || | Sbjct 126946 CCACCTCGGAGGCGTAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCC 126887 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| || | || ||||||||||| || | ||||| || ||||| || Sbjct 126886 AAAGTGCGCCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 126827 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||| | ||||| || || |||| || | ||| ||| || ||||| ||| ||| Sbjct 126826 ATACCTACCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACT 126767 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || |||||||| || |||||||| ||||| Sbjct 126766 TCAAGAGTGATGGTCTTTCCAGTTAGCGTCTTGACAAATATCTGCAT 126720 >seq218049 Length=338111 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || |||||||| || || | ||| || || || || || || || || Sbjct 175146 ATCCTCAAGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTT 175087 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | ||| ||| ||||||||||||||||| || || || || Sbjct 175086 GTCTTGGATCTTCGCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGAT 175027 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| |||||||| Sbjct 175026 GGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 174991 >SEQ37921 Length=51049 Score = 96.9 bits (106), Expect = 6e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||| || | |||| ||| || |||||| || || | || || | | Sbjct 46884 CGGAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCA 46943 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || ||||| ||||| || | ||||| || ||||| || || ||||||||| Sbjct 46944 TCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTG-TCAGGCGGGATACCTTCTTTA 47002 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| || ||||| |||||| || ||||| || Sbjct 47003 TCCTGGATCTTAGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACGTCAAGAGTGATG 47062 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || |||||||| ||||| Sbjct 47063 GTCTTTCCGGTTAGTGTCTTGACAAATATCTGCAT 47097 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| | ||| ||||| | | || || |||| || | |||| ||| || | ||||| Sbjct 46634 AATCTGTATGCCACCACGTAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTAGATATT 46693 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | ||||| | || || | || ||||||||||| || | ||||| || Sbjct 46694 GTAATCCGCCAACGTACGCCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTG 46753 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || ||||| ||||| || || |||| | | ||| ||| || || || Sbjct 46754 GTCAGGCGGGATACCTTCCTTATCCTGGATCTTGGCCTCCACATTATCAATTGTGTCAGA 46813 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || || || || || ||||||||||| ||||| || ||||| Sbjct 46814 GCTCTCAACCTCAAGTGTAATGGTCTTCCCGGTTAGCGTTTTGACAAAGATCTGCAT 46870 >seq158206 Length=25965 Score = 89.7 bits (98), Expect = 9e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||| |||||| ||||| || | |||||| ||| || || || | | || | Sbjct 16762 CGAATTACCAGGTGCAACGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGTCCG 16821 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 | || || || || || ||||| || | | ||| || || || |||| || || ||| Sbjct 16822 CCCTCAAACTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGTAGTATGCCCTCCTTA 16881 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | ||| | ||| ||| || |||||||||||||| || ||||| || Sbjct 16882 TCGTGGATTTTCGCTTTGACATTGTTAATTGTGTCGGAAGACTCAACCTCGAGAGTGATG 16941 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || || || || || || || ||||| || ||| || || Sbjct 16942 GTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCTTTGTA 16980 >SEQ67646 Length=165577 Score = 89.7 bits (98), Expect = 9e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||| |||||| ||||| || | |||||| ||| || || || | | || | Sbjct 7172 CGAATTACCAGGTGCAACGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGTCCG 7231 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 | || || || || || ||||| || | | ||| || || || |||| || || ||| Sbjct 7232 CCCTCAAACTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGTAGTATGCCCTCCTTA 7291 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | ||| | ||| ||| || |||||||||||||| || ||||| || Sbjct 7292 TCGTGGATTTTCGCTTTGACATTGTTAATTGTGTCGGAAGACTCAACCTCGAGAGTGATG 7351 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || || || || || || || ||||| || ||| || || Sbjct 7352 GTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCTTTGTA 7390 >seq232474 Length=955513 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || |||||||| || || | || || || || || || || ||||| Sbjct 317799 ATCCTCAAGTTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCTGGGGGGATGCCCTCTTT 317858 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | ||| | ||| || || |||||||||||||| || || || || Sbjct 317859 GTCCTGGATCTTCGCTTTGACATTATCGATCGTGTCGGAAGACTCAACCTCGAGGGTGAT 317918 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| |||||||| Sbjct 317919 GGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 317954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896511918426480