Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq220121 113 9e-20 SEQ37921 100 6e-16 seq190873 95.1 2e-14 seq257826 89.7 1e-12 seq218049 87.8 4e-12 seq232474 86.0 1e-11 SEQ88112 86.0 1e-11 >seq220121 Length=379296 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || || || | ||||| ||| || |||||| ||||| Sbjct 17225 ATGCCACCACGTAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCC 17166 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 17165 GCCAATGTACGCCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGC 17106 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || || || |||||| || | || || || Sbjct 17105 GGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCC 17046 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| ||||| || ||||||| ||| || | |||||||||||| Sbjct 17045 ACTTCAAGAGTGATGGTCTTTCCAGTTAGTGTCTTGACAAATATCTGCAT 16996 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||| | ||||| ||| |||||||| | || || || |||| |||| || Sbjct 17427 ATGAAGAGTGGATTCTTTTTGGATGTTATAATCTGCCAAGGTACGCCCATCCTCCAGCTG 17368 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 || || |||||||| | ||||| |||||||| || ||||| || || || || || || Sbjct 17367 CTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATCTT 17308 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 || |||||| || | || || || || || ||||||||||| || ||||| Sbjct 17307 TGCCTTCACATTATCGATGGTGTCGGAGCTCTCCACCTCAAGAGTAATGGTCTTTCCAGT 17248 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 ||| || || | ||| |||||||| Sbjct 17247 TAACGTCTTGACAAAAATCTGCAT 17224 >SEQ37921 Length=51049 Score = 100 bits (110), Expect = 6e-16 Identities = 132/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| | || || || ||||| || | || || ||||||||||| | ||| Sbjct 46917 ATATTGTAATCTGCCAAAGTGCGCTCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTC 46976 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || ||||| || || ||||||||||| || || ||| || |||||| || | Sbjct 46977 TGCTG-TCAGGCGGGATACCTTCTTTATCCTGGATCTTAGCCTTCACATTATCAATGGTG 47035 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || ||||| ||||| || || |||| ||| || | |||||||||| Sbjct 47036 TCGGAGCTCTCAACGTCAAGAGTGATGGTCTTTCCGGTTAGTGTCTTGACAAATATCTGC 47095 Query 192535 AT 192536 || Sbjct 47096 AT 47097 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | || || | || | ||| | ||| | ||||| ||| |||||||| | Sbjct 46416 CCACCACGGAGGCGCAGGACAAGATGAAGAGTGGATTCTTTTTGGATGTTATAATCTGCC 46475 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| |||| ||| || || |||||||| | ||||| ||||| || || Sbjct 46476 AAGGTACGCCCATCCTCCAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGA 46535 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| || || || || || || || |||||| || | || || || || Sbjct 46536 ATTCCCTCCTTGTCCTGGATCTTGGACTTCACATTATCAATGGTGTCAGAGCTCTCCACC 46595 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || ||||||||||| || | ||| ||||| || Sbjct 46596 TCAAGAGTGATGGTCTTTCCAGTTAATGTCTTGACAAAAATCTGTAT 46642 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | |||| || | ||||| ||| || || || |||||| Sbjct 47096 ATGCCACCACGGAGACGGAGGACTAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCA 47155 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || || ||||| ||||| | ||||||||||| ||| Sbjct 47156 GCCAATGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGATCTGGT 47215 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| || | || || || Sbjct 47216 GGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCCGAACTCTCA 47275 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| ||||| || || || | ||||| | ||| |||||||| Sbjct 47276 ACTTCTAGAGTTATGGTCTTCCCGGTAAGAGTTTTCACAAAGATCTGCAT 47325 >seq190873 Length=246963 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| || |||| || | || | |||| ||| || ||||| ||||||| Sbjct 126946 CCACCTCGGAGGCGTAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCC 126887 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| || | || || || |||||||| | ||||| || ||||| || Sbjct 126886 AAAGTGCGCCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 126827 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||| | ||||| || || || || |||||| || | || || || ||| Sbjct 126826 ATACCTACCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACT 126767 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || ||||||| || || | |||||||||||| Sbjct 126766 TCAAGAGTGATGGTCTTTCCAGTTAGCGTCTTGACAAATATCTGCAT 126720 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || || || | ||||| |||||| |||||| |||||| Sbjct 127179 ATGCCACCACGTAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCA 127120 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 127119 GCCAGTGTACGCCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGC 127060 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || |||||| || | | || || Sbjct 127059 GGGATACCCTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGCCAGAGCTCTCA 127000 Query 192487 ACTTCT--AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 || ||| || |||||||| || || |||| || || | ||| ||||||| Sbjct 126999 ACCTCTCAAGTGTAATGGTCTTCCCGGTTAGCGTCTTGACAAAGATCTGCA 126949 >seq257826 Length=278361 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/184 (71%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAAT-GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC 192412 |||||| ||||||| || || || |||| || | || || ||||||||||| | | Sbjct 76646 GATATTGTAATCAGCAAAGCGTCCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGCC 76705 Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 192472 || ||||| ||||| ||||| || || || ||||| || || ||||| || | Sbjct 76706 ATTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGTATCTTTGCCTTGACATTGTCAATTG 76765 Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 ||| || || ||||| || || || ||||| || ||||| | ||||| | ||||||| Sbjct 76766 TATCCGAAGACTCTACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACGAATATCT 76825 Query 192533 GCAT 192536 |||| Sbjct 76826 GCAT 76829 >seq218049 Length=338111 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| | |||||| | || || | || || ||||||||||| | | Sbjct 174945 GATATTGTAATCAGCAAGTGTTCGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGCCG 174886 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| ||||| |||| || ||||||||||| || | || ||||| || | Sbjct 174885 CTGCTGATCTGGTGGGTTTCCCTCCTTATCTTGTATCTTTTCCTTGACATTGTCGATCGT 174826 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 | || || || || || || || ||||| || ||||| | | || | ||| ||||| Sbjct 174825 GTTAGATGACTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGGATCTTCACAAAGATCTG 174766 Query 192534 CAT 192536 ||| Sbjct 174765 CAT 174763 >seq232474 Length=955513 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || || || | || | |||||| ||| || ||||||| | Sbjct 353664 CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCT 353723 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| || | ||| || ||||||||||| | || ||| || || || || Sbjct 353724 AGTGTCCGCCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGCGGG 353783 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || ||||| || || || || ||||| || | || || || || || Sbjct 353784 ATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCGACC 353843 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || | || || | ||| |||||||| Sbjct 353844 TCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAAATCTGCAT 353890 >SEQ88112 Length=247478 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | || | || | |||| ||| || ||| || |||||| Sbjct 35219 ATACCACCTCGGAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCA 35160 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || ||||||||||| | | ||| || || || Sbjct 35159 GCAAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGG 35100 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| ||| | || || || || Sbjct 35099 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATGGTGTCCGAGGACTCC 35040 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || ||||| | || || | ||| |||||||| Sbjct 35039 ACCTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 34990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980955254257650