Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value SEQ37921 100 5e-16 seq220121 95.1 2e-14 seq190873 89.7 9e-13 >SEQ37921 Length=51049 Score = 100 bits (110), Expect = 5e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || |||||| ||||||| |||| || || || || | || || ||| Sbjct 46902 GTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCATCCTCGAGCTGCTTTCCA 46961 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | ||||| || ||||| || || ||||||||||| || || ||| || Sbjct 46962 GCAAAGATGAGCCTCTGCTG-TCAGGCGGGATACCTTCTTTATCCTGGATCTTAGCCTTC 47020 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 |||||| || || || || || || || ||||| ||||| || || |||| ||| Sbjct 47021 ACATTATCAATGGTGTCGGAGCTCTCAACGTCAAGAGTGATGGTCTTTCCGGTTAGTGTC 47080 Query 172053 TTAATGAATATCTGCAT 172069 || | ||||||||||| Sbjct 47081 TTGACAAATATCTGCAT 47097 >seq220121 Length=379296 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || || || | ||||| ||| || ||||| ||||| Sbjct 17225 ATGCCACCACGTAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCC 17166 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | || || |||||||| || | ||||| |||||||| Sbjct 17165 GCCAATGTACGCCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGC 17106 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || || |||||| || || || || || Sbjct 17105 GGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCC 17046 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || ||||||| ||| || | ||||||||||| Sbjct 17045 ACTTCAAGAGTGATGGTCTTTCCAGTTAGTGTCTTGACAAATATCTGCAT 16996 >seq190873 Length=246963 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||| || |||| || | || | |||| ||| || |||||| ||||| | Sbjct 126946 CCACCTCGGAGGCGTAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCC 126887 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || || | || || || ||||| || | ||||| |||||||| || Sbjct 126886 AAAGTGCGCCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 126827 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||| | ||||| || || || || |||||| || || || || || ||| Sbjct 126826 ATACCTACCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACT 126767 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| ||||| || ||||||| || || | ||||||||||| Sbjct 126766 TCAAGAGTGATGGTCTTTCCAGTTAGCGTCTTGACAAATATCTGCAT 126720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901974371266200