Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq232474 100 2e-16 seq218049 95.1 1e-14 seq164537 91.5 1e-13 seq220121 89.7 4e-13 seq244562 86.0 5e-12 seq143053 86.0 5e-12 SEQ17609 86.0 5e-12 seq190873 82.4 6e-11 SEQ92809 82.4 6e-11 >seq232474 Length=955513 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || |||||||| ||||| ||| | | ||| || Sbjct 353661 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTGAAGGTGGAATCTTCA 353602 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 353601 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 353542 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | ||| |||| ||||||||| Sbjct 353541 CAGCGCCTGATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGCACACTGGCAGATTACAAC 353482 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 353481 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 353452 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | |||||||| ||||| ||| |||| ||| || | Sbjct 317954 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 317895 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| |||||| |||||||| ||| | ||| || || Sbjct 317894 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 317835 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| || || || || ||||||| | || | || ||||||||| Sbjct 317834 CAACGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTTGCTGATTACAAC 317775 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||||||||| || | ||| |||| Sbjct 317774 ATCCAAAAAGAATCCACTCTCCACTTGGT 317746 >seq218049 Length=338111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || || |||| ||||| ||| | || ||| || Sbjct 175219 ATGCAGATCTTTGTCAAGACCTTGACTAGCAAGACCATCACCCTGGAGGTGGAATCTTCA 175278 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 175279 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 175338 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | || |||||||||||||| Sbjct 175339 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGCACTCTGGCGGATTACAAC 175398 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 175399 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 175428 >seq164537 Length=486414 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | |||||||| ||||||||| | || ||| || Sbjct 442936 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATTACCCTAGAGGTCGAGTCTTCG 442995 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| || ||| | || ||| || Sbjct 442996 GATACGATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 443055 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | |||||| || ||||| ||||||| | || |||||||||||||| Sbjct 443056 CAGAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGATGGTCGCACCCTGGCGGATTACAAC 443115 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | || ||||| Sbjct 443116 ATTCAGAAGGAGTCTACTCTCCATCTGGTG 443145 >seq220121 Length=379296 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | || ||||| || || || | || ||| | Sbjct 16540 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACTCTTGAGGTCGAGAGTTCA 16599 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| || ||| | || ||| ||| Sbjct 16600 GATACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAA 16659 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||||| | ||||| |||| ||||||||| Sbjct 16660 CAGAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGAACATTGGCTGATTACAAC 16719 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || ||||| Sbjct 16720 ATCCAAAAGGAGTCTAC 16736 >seq244562 Length=205871 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || ||||| || || ||| | || |||| | Sbjct 19731 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 19790 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 19791 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 19850 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || |||| || |||||| Sbjct 19851 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCAGACTACAAC 19910 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || | ||| ||||| | | || ||||| || Sbjct 19911 ATTCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGAGGTGG 19957 >seq143053 Length=553558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||| ||| | || ||| || Sbjct 191253 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 191312 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| |||||||| ||| | ||| |||| || Sbjct 191313 GACACCATTGACAATGTGAAGGCGAAGATCTAGGACAAAGAGGGCATCCCCCTGGACCAG 191372 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | || | |||||||||||| Sbjct 191373 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTGCGGATTACAAC 191432 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 191433 ATTCAGAAGGAGTCTACTGTACACTTGGTG 191462 >SEQ17609 Length=187100 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | |||||||| ||||| ||| | || ||| || Sbjct 164307 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 164248 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 164247 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 164188 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | || | |||||||||||| Sbjct 164187 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCGGATTACAAC 164128 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 164127 ATTCAGAAGGAGTCTACTCTCCACTTGGTG 164098 >seq190873 Length=246963 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 110275 GCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGA 110334 ||| || |||||||| || | || ||||| || || || | || ||| | || Sbjct 126266 GCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACTCTTGAGGTCGAGAGTTCAGA 126325 Query 110335 TACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACA 110394 ||| | | | | || ||| |||||| ||||| || ||| | || ||| ||||| Sbjct 126326 TACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACA 126385 Query 110395 AAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACAT 110454 || || || | ||| || || ||||| ||||||| | | ||| |||| ||||||||||| Sbjct 126386 GAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACATTGGCCGATTACAACAT 126445 Query 110455 TCAAAAAGAATCTAC 110469 ||||| || ||||| Sbjct 126446 CCAAAAGGAGTCTAC 126460 >SEQ92809 Length=257781 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || ||||| || || ||| | || |||| | Sbjct 194397 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 194456 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 194457 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 194516 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || |||| || |||||| Sbjct 194517 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCAGACTACAAC 194576 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 194577 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 194606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411435600715427