Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq232474 91.5 1e-13 seq171693 86.0 6e-12 seq3697 82.4 7e-11 >seq232474 Length=955513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| || || | || ||||||||||| ||||||||||| Sbjct 317727 GCCACCACGGAGACGGAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGC 317786 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | |||| || | || || ||||| || || ||| |||||| |||||||| || || | Sbjct 317787 AAGAGTGCGTCCA-TCCTCAAGTTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCTGGGG 317845 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | ||||| |||||||| || || ||| | | || | |||||| | | || | Sbjct 317846 GGATGCCCTCTTTGTCCTGGATCTTCGCTTTGACATTATCGATCGTGTCGGAAGACTCAA 317905 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | || | ||||||||||| | || || || || |||||||| Sbjct 317906 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 317954 >seq171693 Length=18784 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || || |||||||| | |||| ||| || ||||| || || Sbjct 14541 GTGGATTCCTTCTGGATATTGTAATCAGCAAGGGTGCGTCCGTCCTCAAGTTGCTTGCCG 14482 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| || ||||| || || || ||||| || ||||| || ||| || Sbjct 14481 GCAAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTC 14422 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || |||| || | ||||||||||||||||| Sbjct 14421 ACATTGTCGATCGTGTCGGATGACTCAACCTCAAGTGTGATGGTCTTGCCGGTCAATGTC 14362 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 14361 TTGACGAAGATCTGCAT 14345 >seq3697 Length=245388 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 ||||| || || | || | || || || | || || || || || |||||||||||| Sbjct 107366 TGGCCACCACGGAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAATCG 107425 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | | |||| ||| ||||| || || ||||| ||||||| || ||||| || || Sbjct 107426 GTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGC 107485 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || ||||| || ||||| || ||| || | | || | ||||| | || || Sbjct 107486 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTAACATTGTCAATGGTGTCAGAGGACTCC 107545 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || |||| || | ||||||||||| | || || ||||| || ||||| Sbjct 107546 ACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 107595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486837521914800